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    LOC6608537 longitudinals lacking protein [ Drosophila sechellia ]

    Gene ID: 6608537, updated on 10-May-2024

    Summary

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    Gene symbol
    LOC6608537
    Gene description
    longitudinals lacking protein
    Locus tag
    Dsec_GM20503
    See related
    EnsemblRapid:LOC6608537
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Drosophila sechellia
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    GM20503; GM20504; GM20505; GM20506; GM20508; GM20509; GM20511; GM20512; GM20513; GM20514; GM20515; GM20517; GM20503-PA; GM20504-PA; GM20505-PA; GM20506-PA; GM20508-PA; GM20509-PA; GM20511-PA; GM20512-PA; GM20513-PA; GM20514-PA; GM20515-PA; GM20517-PA
    Orthologs
    fruit fly all
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    Genomic context

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    See LOC6608537 in Genome Data Viewer
    Location:
    chromosome: 2R
    Exon count:
    29
    Annotation release Status Assembly Chr Location
    101 current ASM438219v1 (GCF_004382195.1) 2R NC_045950.1 (6700371..6760350, complement)

    Chromosome 2R - NC_045950.1Genomic Context describing neighboring genes Neighboring gene translin Neighboring gene peflin Neighboring gene uncharacterized LOC116800298 Neighboring gene uncharacterized LOC116800299 Neighboring gene uncharacterized LOC116800300 Neighboring gene broad-complex core protein Neighboring gene squamosa promoter-binding-like protein 2 Neighboring gene mannosylglucosyl-3-phosphoglycerate phosphatase Neighboring gene ARF GTPase-activating protein GIT1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_045950.1 Chromosome 2R Reference ASM438219v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    longitudinals lacking protein; longitudinals lacking protein, isoforms A/B/D/L; longitudinals lacking protein, isoforms F/I/K/T; longitudinals lacking protein, isoforms H/M/V; longitudinals lacking protein, isoforms J/P/Q/S/Z; longitudinals lacking protein, isoforms N/O/W/X/Y
    Names
    Dsec\GM20503
    Dsec\GM20503-PA
    Dsec\GM20504
    Dsec\GM20504-PA
    Dsec\GM20505
    Dsec\GM20505-PA
    Dsec\GM20506
    Dsec\GM20506-PA
    Dsec\GM20508
    Dsec\GM20508-PA
    Dsec\GM20509
    Dsec\GM20509-PA
    Dsec\GM20511
    Dsec\GM20511-PA
    Dsec\GM20512
    Dsec\GM20512-PA
    Dsec\GM20513
    Dsec\GM20513-PA
    Dsec\GM20514
    Dsec\GM20514-PA
    Dsec\GM20515
    Dsec\GM20515-PA
    Dsec\GM20517
    Dsec\GM20517-PA
    dsec_GLEANR_3323
    dsec_GLEANR_3324
    dsec_GLEANR_3325
    dsec_GLEANR_3326
    dsec_GLEANR_3328
    dsec_GLEANR_3329
    dsec_GLEANR_3330
    dsec_GLEANR_3331
    dsec_GLEANR_3332
    dsec_GLEANR_3333
    dsec_GLEANR_3334
    dsec_GLEANR_3336

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Drosophila sechellia Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM438219v1

    Genomic

    1. NC_045950.1 Reference ASM438219v1

      Range
      6700371..6760350 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_032714271.1 → XP_032570162.1  longitudinals lacking protein isoform X3

      Related
      XP_032570162.1, XM_032714271.1
      Conserved Domains (3) summary
      sd00017
      Location:798 → 818
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd18315
      Location:31 → 114
      BTB_POZ_BAB-like; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Drosophila melanogaster proteins bric-a-brac 1 (BAB1), bric-a-brac 2 (BAB2), modifier of mdg4 (doom), and similar proteins
      pfam13909
      Location:826 → 849
      zf-H2C2_5; C2H2-type zinc-finger domain

    2. XM_032714281.1 → XP_032570172.1  longitudinals lacking protein, isoforms H/M/V isoform X14

      Related
      XP_032570172.1, XM_032714281.1
      Conserved Domains (1) summary
      cd18315
      Location:31 → 114
      BTB_POZ_BAB-like; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Drosophila melanogaster proteins bric-a-brac 1 (BAB1), bric-a-brac 2 (BAB2), modifier of mdg4 (doom), and similar proteins

    3. XM_032714284.1 → XP_032570175.1  longitudinals lacking protein, isoforms N/O/W/X/Y isoform X17

      Related
      XP_032570175.1, XM_032714284.1
      Conserved Domains (4) summary
      PLN00104
      Location:404 → 515
      PLN00104; MYST -like histone acetyltransferase; Provisional
      sd00017
      Location:468 → 486
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd18315
      Location:31 → 114
      BTB_POZ_BAB-like; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Drosophila melanogaster proteins bric-a-brac 1 (BAB1), bric-a-brac 2 (BAB2), modifier of mdg4 (doom), and similar proteins
      pfam13894
      Location:495 → 517
      zf-C2H2_4; C2H2-type zinc finger

    4. XM_032714273.1 → XP_032570164.1  longitudinals lacking protein, isoforms N/O/W/X/Y isoform X5

      Related
      XP_032570164.1, XM_032714273.1
      Conserved Domains (3) summary
      sd00019
      Location:714 → 734
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd18315
      Location:31 → 114
      BTB_POZ_BAB-like; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Drosophila melanogaster proteins bric-a-brac 1 (BAB1), bric-a-brac 2 (BAB2), modifier of mdg4 (doom), and similar proteins
      pfam00096
      Location:742 → 764
      zf-C2H2; Zinc finger, C2H2 type

    5. XM_032714277.1 → XP_032570168.1  longitudinals lacking protein, isoforms H/M/V isoform X9

      Related
      XP_032570168.1, XM_032714277.1
      Conserved Domains (2) summary
      sd00017
      Location:532 → 552
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd18315
      Location:31 → 114
      BTB_POZ_BAB-like; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Drosophila melanogaster proteins bric-a-brac 1 (BAB1), bric-a-brac 2 (BAB2), modifier of mdg4 (doom), and similar proteins

    6. XM_032714278.1 → XP_032570169.1  longitudinals lacking protein, isoforms H/M/V isoform X10

      Related
      XP_032570169.1, XM_032714278.1
      Conserved Domains (2) summary
      sd00017
      Location:531 → 551
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd18315
      Location:31 → 114
      BTB_POZ_BAB-like; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Drosophila melanogaster proteins bric-a-brac 1 (BAB1), bric-a-brac 2 (BAB2), modifier of mdg4 (doom), and similar proteins

    7. XM_032714274.1 → XP_032570165.1  longitudinals lacking protein, isoforms H/M/V isoform X6

      Related
      XP_032570165.1, XM_032714274.1
      Conserved Domains (3) summary
      sd00017
      Location:703 → 723
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd18315
      Location:31 → 114
      BTB_POZ_BAB-like; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Drosophila melanogaster proteins bric-a-brac 1 (BAB1), bric-a-brac 2 (BAB2), modifier of mdg4 (doom), and similar proteins
      pfam00096
      Location:730 → 752
      zf-C2H2; Zinc finger, C2H2 type

    8. XM_032714294.1 → XP_032570185.1  longitudinals lacking protein, isoforms J/P/Q/S/Z isoform X25

      Related
      XP_032570185.1, XM_032714294.1
      Conserved Domains (1) summary
      sd00017
      Location:373 → 393
      ZF_C2H2; C2H2 Zn finger [structural motif]

    9. XM_032714270.1 → XP_032570161.1  longitudinals lacking protein, isoforms J/P/Q/S/Z isoform X2

      Related
      XP_032570161.1, XM_032714270.1
      Conserved Domains (2) summary
      sd00017
      Location:848 → 868
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd18315
      Location:31 → 114
      BTB_POZ_BAB-like; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Drosophila melanogaster proteins bric-a-brac 1 (BAB1), bric-a-brac 2 (BAB2), modifier of mdg4 (doom), and similar proteins

    10. XM_032714293.1 → XP_032570184.1  longitudinals lacking protein, isoforms J/P/Q/S/Z isoform X24

      Related
      XP_032570184.1, XM_032714293.1
      Conserved Domains (1) summary
      cd18315
      Location:31 → 114
      BTB_POZ_BAB-like; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Drosophila melanogaster proteins bric-a-brac 1 (BAB1), bric-a-brac 2 (BAB2), modifier of mdg4 (doom), and similar proteins

    11. XM_032714272.1 → XP_032570163.1  longitudinals lacking protein, isoforms A/B/D/L isoform X4

      Related
      XP_032570163.1, XM_032714272.1
      Conserved Domains (3) summary
      sd00019
      Location:688 → 708
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd18315
      Location:31 → 114
      BTB_POZ_BAB-like; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Drosophila melanogaster proteins bric-a-brac 1 (BAB1), bric-a-brac 2 (BAB2), modifier of mdg4 (doom), and similar proteins
      pfam00096
      Location:686 → 706
      zf-C2H2; Zinc finger, C2H2 type

    12. XM_032714269.1 → XP_032570160.1  longitudinals lacking protein, isoforms F/I/K/T isoform X1

      Related
      XP_032570160.1, XM_032714269.1
      Conserved Domains (3) summary
      sd00017
      Location:907 → 927
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd18315
      Location:31 → 114
      BTB_POZ_BAB-like; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Drosophila melanogaster proteins bric-a-brac 1 (BAB1), bric-a-brac 2 (BAB2), modifier of mdg4 (doom), and similar proteins
      pfam13909
      Location:937 → 959
      zf-H2C2_5; C2H2-type zinc-finger domain

    13. XM_032714267.1 → XP_032570158.1  longitudinals lacking protein, isoforms F/I/K/T isoform X1

      Related
      XP_032570158.1, XM_032714267.1
      Conserved Domains (3) summary
      sd00017
      Location:907 → 927
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd18315
      Location:31 → 114
      BTB_POZ_BAB-like; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Drosophila melanogaster proteins bric-a-brac 1 (BAB1), bric-a-brac 2 (BAB2), modifier of mdg4 (doom), and similar proteins
      pfam13909
      Location:937 → 959
      zf-H2C2_5; C2H2-type zinc-finger domain

    14. XM_032714268.1 → XP_032570159.1  longitudinals lacking protein, isoforms F/I/K/T isoform X1

      Related
      XP_032570159.1, XM_032714268.1
      Conserved Domains (3) summary
      sd00017
      Location:907 → 927
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd18315
      Location:31 → 114
      BTB_POZ_BAB-like; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Drosophila melanogaster proteins bric-a-brac 1 (BAB1), bric-a-brac 2 (BAB2), modifier of mdg4 (doom), and similar proteins
      pfam13909
      Location:937 → 959
      zf-H2C2_5; C2H2-type zinc-finger domain

    15. XM_032714266.1 → XP_032570157.1  longitudinals lacking protein, isoforms F/I/K/T isoform X1

      Related
      XP_032570157.1, XM_032714266.1
      Conserved Domains (3) summary
      sd00017
      Location:907 → 927
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd18315
      Location:31 → 114
      BTB_POZ_BAB-like; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Drosophila melanogaster proteins bric-a-brac 1 (BAB1), bric-a-brac 2 (BAB2), modifier of mdg4 (doom), and similar proteins
      pfam13909
      Location:937 → 959
      zf-H2C2_5; C2H2-type zinc-finger domain

    16. XM_032714285.1 → XP_032570176.1  longitudinals lacking protein isoform X18

      Related
      XP_032570176.1, XM_032714285.1
      Conserved Domains (2) summary
      sd00019
      Location:482 → 502
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd18315
      Location:31 → 114
      BTB_POZ_BAB-like; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Drosophila melanogaster proteins bric-a-brac 1 (BAB1), bric-a-brac 2 (BAB2), modifier of mdg4 (doom), and similar proteins

    17. XM_032714282.1 → XP_032570173.1  longitudinals lacking protein, isoforms H/M/V isoform X15

      Related
      XP_032570173.1, XM_032714282.1
      Conserved Domains (1) summary
      cd18315
      Location:31 → 114
      BTB_POZ_BAB-like; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Drosophila melanogaster proteins bric-a-brac 1 (BAB1), bric-a-brac 2 (BAB2), modifier of mdg4 (doom), and similar proteins

    18. XM_032714283.1 → XP_032570174.1  longitudinals lacking protein, isoforms H/M/V isoform X16

      Related
      XP_032570174.1, XM_032714283.1
      Conserved Domains (1) summary
      cd18315
      Location:31 → 114
      BTB_POZ_BAB-like; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Drosophila melanogaster proteins bric-a-brac 1 (BAB1), bric-a-brac 2 (BAB2), modifier of mdg4 (doom), and similar proteins

    19. XM_032714288.1 → XP_032570179.1  longitudinals lacking protein, isoforms H/M/V isoform X19

      Related
      XP_032570179.1, XM_032714288.1
      Conserved Domains (4) summary
      PHA00733
      Location:487 → 565
      PHA00733; hypothetical protein
      sd00017
      Location:509 → 531
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd18315
      Location:31 → 114
      BTB_POZ_BAB-like; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Drosophila melanogaster proteins bric-a-brac 1 (BAB1), bric-a-brac 2 (BAB2), modifier of mdg4 (doom), and similar proteins
      pfam00096
      Location:538 → 557
      zf-C2H2; Zinc finger, C2H2 type

    20. XM_032714289.1 → XP_032570180.1  longitudinals lacking protein, isoforms H/M/V isoform X20

      Related
      XP_032570180.1, XM_032714289.1
      Conserved Domains (1) summary
      cd18315
      Location:31 → 114
      BTB_POZ_BAB-like; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Drosophila melanogaster proteins bric-a-brac 1 (BAB1), bric-a-brac 2 (BAB2), modifier of mdg4 (doom), and similar proteins

    21. XM_032714291.1 → XP_032570182.1  longitudinals lacking protein, isoforms A/B/D/L isoform X22

      Related
      XP_032570182.1, XM_032714291.1
      Conserved Domains (4) summary
      sd00019
      Location:467 → 490
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd18315
      Location:31 → 114
      BTB_POZ_BAB-like; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Drosophila melanogaster proteins bric-a-brac 1 (BAB1), bric-a-brac 2 (BAB2), modifier of mdg4 (doom), and similar proteins
      pfam00096
      Location:465 → 485
      zf-C2H2; Zinc finger, C2H2 type
      pfam13909
      Location:497 → 519
      zf-H2C2_5; C2H2-type zinc-finger domain

    22. XM_032714290.1 → XP_032570181.1  longitudinals lacking protein, isoforms H/M/V isoform X21

      Related
      XP_032570181.1, XM_032714290.1
      Conserved Domains (1) summary
      cd18315
      Location:31 → 114
      BTB_POZ_BAB-like; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Drosophila melanogaster proteins bric-a-brac 1 (BAB1), bric-a-brac 2 (BAB2), modifier of mdg4 (doom), and similar proteins

    23. XM_032714275.1 → XP_032570166.1  longitudinals lacking protein, isoforms H/M/V isoform X7

      Related
      XP_032570166.1, XM_032714275.1
      Conserved Domains (4) summary
      sd00017
      Location:483 → 503
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd18315
      Location:31 → 114
      BTB_POZ_BAB-like; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Drosophila melanogaster proteins bric-a-brac 1 (BAB1), bric-a-brac 2 (BAB2), modifier of mdg4 (doom), and similar proteins
      pfam00096
      Location:481 → 501
      zf-C2H2; Zinc finger, C2H2 type
      pfam13894
      Location:511 → 534
      zf-C2H2_4; C2H2-type zinc finger

    24. XM_032714279.1 → XP_032570170.1  longitudinals lacking protein, isoforms H/M/V isoform X11

      Related
      XP_032570170.1, XM_032714279.1
      Conserved Domains (1) summary
      cd18315
      Location:31 → 114
      BTB_POZ_BAB-like; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Drosophila melanogaster proteins bric-a-brac 1 (BAB1), bric-a-brac 2 (BAB2), modifier of mdg4 (doom), and similar proteins

    25. XM_032714276.1 → XP_032570167.1  longitudinals lacking protein, isoforms H/M/V isoform X8

      Related
      XP_032570167.1, XM_032714276.1
      Conserved Domains (3) summary
      sd00017
      Location:531 → 548
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd18315
      Location:31 → 114
      BTB_POZ_BAB-like; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Drosophila melanogaster proteins bric-a-brac 1 (BAB1), bric-a-brac 2 (BAB2), modifier of mdg4 (doom), and similar proteins
      pfam05605
      Location:527 → 581
      zf-Di19; Drought induced 19 protein (Di19), zinc-binding

    26. XM_032714280.1 → XP_032570171.1  longitudinals lacking protein, isoforms H/M/V isoform X13

      Related
      XP_032570171.1, XM_032714280.1
      Conserved Domains (3) summary
      sd00019
      Location:553 → 573
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd18315
      Location:31 → 114
      BTB_POZ_BAB-like; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Drosophila melanogaster proteins bric-a-brac 1 (BAB1), bric-a-brac 2 (BAB2), modifier of mdg4 (doom), and similar proteins
      pfam00096
      Location:580 → 604
      zf-C2H2; Zinc finger, C2H2 type

    27. XM_002033235.2 → XP_002033271.1  longitudinals lacking protein, isoforms H/M/V isoform X12

      UniProtKB/TrEMBL
      B4HMS2
      Related
      XP_002033271.1, XM_002033235.2
      Conserved Domains (4) summary
      smart00225
      Location:33 → 117
      BTB; Broad-Complex, Tramtrack and Bric a brac
      sd00017
      Location:555 → 573
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00651
      Location:22 → 117
      BTB; BTB/POZ domain
      pfam13465
      Location:568 → 593
      zf-H2C2_2; Zinc-finger double domain

    28. XM_032714292.1 → XP_032570183.1  longitudinals lacking protein, isoforms H/M/V isoform X23

      Related
      XP_032570183.1, XM_032714292.1
      Conserved Domains (1) summary
      cd18315
      Location:31 → 114
      BTB_POZ_BAB-like; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Drosophila melanogaster proteins bric-a-brac 1 (BAB1), bric-a-brac 2 (BAB2), modifier of mdg4 (doom), and similar proteins
    Nucleotide Protein Strain
    Heading Accession and Version

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