U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    Srp54k signal recognition particle 54k [ Drosophila sechellia ]

    Gene ID: 6610862, updated on 22-May-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    Srp54k
    Gene description
    signal recognition particle 54k
    Locus tag
    Dsec_GM14699
    See related
    EnsemblRapid:LOC6610862
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Drosophila sechellia
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    GM14699; GM14699-PA
    Orthologs
    fruit fly all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Srp54k in Genome Data Viewer
    Location:
    chromosome: 3L
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    101 current ASM438219v1 (GCF_004382195.1) 3L NC_045951.1 (5083080..5085170)

    Chromosome 3L - NC_045951.1Genomic Context describing neighboring genes Neighboring gene flap endonuclease GEN Neighboring gene alanine--tRNA ligase, mitochondrial Neighboring gene ganglioside induced differentiation associated protein 1 Neighboring gene protein alan shepard Neighboring gene acyl-coenzyme A diphosphatase Fitm Neighboring gene uncharacterized LOC6610864 Neighboring gene transfer RNA serine (anticodon AGA)

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_045951.1 Chromosome 3L Reference ASM438219v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 7S RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables endoplasmic reticulum signal peptide binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in SRP-dependent cotranslational protein targeting to membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in SRP-dependent cotranslational protein targeting to membrane, translocation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of signal recognition particle, endoplasmic reticulum targeting IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    signal recognition particle 54 kDa protein
    Names
    Dsec\GM14699
    Dsec\GM14699-PA
    dsec_GLEANR_15451

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Drosophila sechellia Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM438219v1

    Genomic

    1. NC_045951.1 Reference ASM438219v1

      Range
      5083080..5085170
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002035392.2 → XP_002035428.1  signal recognition particle 54 kDa protein

      See identical proteins and their annotated locations for XP_002035428.1

      UniProtKB/TrEMBL
      B4HUE3
      Related
      XP_002035428.1, XM_002035392.2
      Conserved Domains (4) summary
      TIGR01425
      Location:2 → 428
      SRP54_euk; signal recognition particle protein SRP54
      pfam00448
      Location:102 → 294
      SRP54; SRP54-type protein, GTPase domain
      pfam02881
      Location:6 → 83
      SRP54_N; SRP54-type protein, helical bundle domain
      pfam02978
      Location:327 → 428
      SRP_SPB; Signal peptide binding domain
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials