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    LOC6620320 ubiquitin carboxyl-terminal hydrolase isozyme L5 [ Drosophila sechellia ]

    Gene ID: 6620320, updated on 10-May-2024

    Summary

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    Gene symbol
    LOC6620320
    Gene description
    ubiquitin carboxyl-terminal hydrolase isozyme L5
    Locus tag
    Dsec_GM13220
    See related
    EnsemblRapid:LOC6620320
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Drosophila sechellia
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    GM13220; GM13220-PA
    Orthologs
    fruit fly all
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    Genomic context

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    See LOC6620320 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    101 current ASM438219v1 (GCF_004382195.1) X NC_045954.1 (11793856..11795168, complement)

    Chromosome X - NC_045954.1Genomic Context describing neighboring genes Neighboring gene Cytochrome P450 311a1 Neighboring gene Cytochrome P450 318a1 Neighboring gene collagen alpha-1(I) chain Neighboring gene uncharacterized LOC116802268

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_045954.1 Chromosome X Reference ASM438219v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cysteine-type deubiquitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein deubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ubiquitin carboxyl-terminal hydrolase isozyme L5
    Names
    Dsec\GM13220
    Dsec\GM13220-PA
    dsec_GLEANR_13776

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Drosophila sechellia Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM438219v1

    Genomic

    1. NC_045954.1 Reference ASM438219v1

      Range
      11793856..11795168 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002044492.2 → XP_002044528.1  ubiquitin carboxyl-terminal hydrolase isozyme L5

      See identical proteins and their annotated locations for XP_002044528.1

      UniProtKB/TrEMBL
      B4ILB8
      Related
      XP_002044528.1, XM_002044492.2
      Conserved Domains (1) summary
      cd09617
      Location:25 → 238
      Peptidase_C12_UCH37_BAP1; Cysteine peptidase C12 containing ubiquitin carboxyl-terminal hydrolase (UCH) families UCH37 (UCH-L5) and BAP1
    Nucleotide Protein Strain
    Heading Accession and Version

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