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    EDIL3-DT EDIL3 divergent transcript [ Homo sapiens (human) ]

    Gene ID: 105379057, updated on 17-Sep-2024

    Summary

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    Official Symbol
    EDIL3-DTprovided by HGNC
    Official Full Name
    EDIL3 divergent transcriptprovided by HGNC
    Primary source
    HGNC:HGNC:40204
    See related
    Ensembl:ENSG00000250320 AllianceGenome:HGNC:40204
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See EDIL3-DT in Genome Data Viewer
    Location:
    5q14.3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (84382422..84417658)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (84871050..84906290)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (83678240..83713476)

    Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene EGF like repeats and discoidin domains 3 Neighboring gene RNA, U6 small nuclear 448, pseudogene Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr5:83561430-83562113 Neighboring gene uncharacterized LOC124901223 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:83776469-83777065 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:83777066-83777661 Neighboring gene uncharacterized LOC105379059 Neighboring gene NANOG hESC enhancer GRCh37_chr5:83863995-83864551 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr5:83999549-84000393 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:84256683-84257184 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:84257185-84257684 Neighboring gene peptidylprolyl isomerase A pseudogene 79

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    Genotypes

    General gene information

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    Other Names

    • CTD-2269F5.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_183295.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC026440, AC113383

    2. NR_183296.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC026440, AC113383

    3. NR_183297.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC026440, AC113383
      Related
      ENST00000515688.6

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

      Range
      84382422..84417658
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060929.1 Alternate T2T-CHM13v2.0

      Range
      84871050..84906290
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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    Research Materials