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    CEACAM16-AS1 CEACAM16, CEACAM19 and PVR antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 107985305, updated on 22-Oct-2024

    Summary

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    Official Symbol
    CEACAM16-AS1provided by HGNC
    Official Full Name
    CEACAM16, CEACAM19 and PVR antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:55317
    See related
    Ensembl:ENSG00000266903 AllianceGenome:HGNC:55317
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See CEACAM16-AS1 in Genome Data Viewer
    Location:
    19q13.31-q13.32
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (44699038..44725184, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 19 NC_060943.1 (47523785..47549936, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (45202308..45228448, complement)

    Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene PVR cell adhesion molecule Neighboring gene CEA cell adhesion molecule 19 Neighboring gene uncharacterized LOC107985306 Neighboring gene Sharpr-MPRA regulatory region 3873 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:45192479-45192980 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:45192981-45193480 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14765 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:45199988-45200593 Neighboring gene CEA cell adhesion molecule 16, tectorial membrane component Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14766 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14767 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14768 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:45240385-45240886 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10735 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10736 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10737 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14769 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10738 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10739 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14770 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:45258284-45258994 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:45259896-45260547 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:45261851-45262500 Neighboring gene BCL3 transcription coactivator Neighboring gene uncharacterized LOC124900431 Neighboring gene microRNA 8085

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_186813.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC243964
      Related
      ENST00000591312.3

    2. NR_186814.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC243964
      Related
      ENST00000657348.2

    3. NR_186815.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC243964
      Related
      ENST00000702856.2

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

      Range
      44699038..44725184 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060943.1 Alternate T2T-CHM13v2.0

      Range
      47523785..47549936 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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    Molecular Biology Databases