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    TGA2 transcription factor TGA1 [ Brassica rapa (field mustard) ]

    Gene ID: 103873950, updated on 7-Dec-2023

    Summary

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    Gene symbol
    TGA2
    Gene description
    transcription factor TGA1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Brassica rapa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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    Genomic context

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    See TGA2 in Genome Data Viewer
    Location:
    chromosome: A6
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    103.20201202 current CAAS_Brap_v3.01 (GCF_000309985.2) A06 NC_024800.2 (19877287..19880769)
    101 previous assembly Brapa_1.0 (GCF_000309985.1) A6 NC_024800.1 (15261379..15264886)

    Chromosome A06 - NC_024800.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103873948 Neighboring gene uncharacterized LOC117125825 Neighboring gene 50S ribosomal protein L29, chloroplastic Neighboring gene transcription factor MYB53 Neighboring gene probable LRR receptor-like serine/threonine-protein kinase At5g65240

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor TGA1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Brassica rapa Updated Annotation Release 103.20201202

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CAAS_Brap_v3.01 Primary Assembly

    Genomic

    1. NC_024800.2 Reference CAAS_Brap_v3.01 Primary Assembly

      Range
      19877287..19880769
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009152355.3 → XP_009150603.1  transcription factor TGA1 isoform X2

      See identical proteins and their annotated locations for XP_009150603.1

      UniProtKB/TrEMBL
      A0A398AGT1, A0A3P5YWD4, A0A3P6AUB1, E6Y8B7
      Conserved Domains (2) summary
      cd14708
      Location:83 → 134
      bZIP_HBP1b-like; Basic leucine zipper (bZIP) domain of uncharaterized BZIP transcription factors with similarity to Triticum aestivum HBP-1b: a DNA-binding and dimerization domain
      pfam14144
      Location:169 → 245
      DOG1; Seed dormancy control

    2. XM_009152356.3 → XP_009150604.1  transcription factor TGA1 isoform X2

      See identical proteins and their annotated locations for XP_009150604.1

      UniProtKB/TrEMBL
      A0A398AGT1, A0A3P5YWD4, A0A3P6AUB1, E6Y8B7
      Conserved Domains (2) summary
      cd14708
      Location:83 → 134
      bZIP_HBP1b-like; Basic leucine zipper (bZIP) domain of uncharaterized BZIP transcription factors with similarity to Triticum aestivum HBP-1b: a DNA-binding and dimerization domain
      pfam14144
      Location:169 → 245
      DOG1; Seed dormancy control

    3. XM_018660006.2 → XP_018515522.1  transcription factor TGA1 isoform X2

      UniProtKB/TrEMBL
      A0A398AGT1, A0A3P5YWD4, A0A3P6AUB1, E6Y8B7
      Conserved Domains (2) summary
      cd14708
      Location:83 → 134
      bZIP_HBP1b-like; Basic leucine zipper (bZIP) domain of uncharaterized BZIP transcription factors with similarity to Triticum aestivum HBP-1b: a DNA-binding and dimerization domain
      pfam14144
      Location:169 → 245
      DOG1; Seed dormancy control

    4. XM_018660005.2 → XP_018515521.1  transcription factor TGA1 isoform X1

      UniProtKB/TrEMBL
      A0A398AGT1, A0A3P6AUB1, A0A8D9G724
      Conserved Domains (2) summary
      cd14708
      Location:101 → 152
      bZIP_HBP1b-like; Basic leucine zipper (bZIP) domain of uncharaterized BZIP transcription factors with similarity to Triticum aestivum HBP-1b: a DNA-binding and dimerization domain
      pfam14144
      Location:187 → 261
      DOG1; Seed dormancy control
    Nucleotide Protein
    Heading Accession and Version

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