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    LOC106404953 probable WRKY transcription factor 36 [ Brassica napus (rape) ]

    Gene ID: 106404953, updated on 30-Nov-2023

    Summary

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    Gene symbol
    LOC106404953
    Gene description
    probable WRKY transcription factor 36
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Brassica napus
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
    Also known as
    WRKY36; WRKY36.1
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    Genomic context

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    See LOC106404953 in Genome Data Viewer
    Location:
    chromosome: C6
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    102 current Da-Ae (GCF_020379485.1) C6 NC_063449.1 (42115925..42118390, complement)
    101 previous assembly Bra_napus_v2.0 (GCF_000686985.2) C6 NC_027772.2 (38468715..38471123, complement)

    Chromosome C6 - NC_063449.1Genomic Context describing neighboring genes Neighboring gene ubiquitin-conjugating enzyme E2 2 Neighboring gene SNF1-related protein kinase regulatory subunit gamma-1-like Neighboring gene alpha-amylase 3, chloroplastic Neighboring gene hypersensitive-induced response protein 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable WRKY transcription factor 36
    Names
    WRKY transcription factor 36

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001315886.1 → NP_001302815.1  probable WRKY transcription factor 36

      Status: PROVISIONAL

      Source sequence(s)
      FJ384107
      UniProtKB/TrEMBL
      C5H9Z2
      Conserved Domains (2) summary
      smart00774
      Location:240 → 298
      WRKY; DNA binding domain
      cl06123
      Location:17 → 73
      DHR2_DOCK; Dock Homology Region 2, a GEF domain, of Dedicator of Cytokinesis proteins

    RefSeqs of Annotated Genomes: Brassica napus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Da-Ae Primary Assembly

    Genomic

    1. NC_063449.1 Reference Da-Ae Primary Assembly

      Range
      42115925..42118390 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_013845586.3 → XP_013701040.2  probable WRKY transcription factor 36 isoform X1

      UniProtKB/TrEMBL
      C4N0W9
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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    Molecular Biology Databases