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    [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821007, updated on 22-Aug-2024

    Summary

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    Primary source
    Araport:AT3G17430
    Locus tag
    AT3G17430
    See related
    TAIR:AT3G17430
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Summary
    Nucleotide/sugar transporter family protein
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    9
    Sequence:
    Chromosome: 3; NC_003074.8 (5965869..5969296)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene F-box family protein Neighboring gene Protein kinase superfamily protein Neighboring gene glyoxysomal protein kinase 1 Neighboring gene Putative plant snare 13 Neighboring gene hAT dimerization domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Isolation and proteomic characterization of the Arabidopsis Golgi defines functional and novel components involved in plant cell wall biosynthesis. Parsons HT, et al. Plant Physiol, 2012 May. PMID 22430844, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713
    3. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001338289.1
    NM_112622.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables organic anion transmembrane transporter activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    located_in Golgi apparatus HDA PubMed 
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Nucleotide-sugar transporter family protein
    NP_566577.1
    • Nucleotide-sugar transporter family protein; FUNCTIONS IN: organic anion transmembrane transporter activity; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: nodulin MtN21 /EamA-like transporter family protein (TAIR:AT1G48230.1); Has 2225 Blast hits to 2218 proteins in 235 species: Archae - 0; Bacteria - 16; Metazoa - 439; Fungi - 391; Plants - 1151; Viruses - 0; Other Eukaryotes - 228 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      5965869..5969296
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112622.4 → NP_566577.1  Nucleotide-sugar transporter family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566577.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LRP2
      UniProtKB/TrEMBL
      A0A178VCQ1, A0A1W6AJZ7, A0A384KZW7, A0A7G2E190
      Conserved Domains (1) summary
      cd21092
      Location:79 → 304
      TPT_S35C2; solute carrier family 35 member C2, member of the triose-phosphate transporter family

    2. NM_001338289.1 → NP_001326874.1  Nucleotide-sugar transporter family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LRP2
      UniProtKB/TrEMBL
      A0A178VCQ1, A0A1W6AJZ7, A0A384KZW7, A0A7G2E190
      Conserved Domains (1) summary
      cd21092
      Location:79 → 304
      TPT_S35C2; solute carrier family 35 member C2, member of the triose-phosphate transporter family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LRP2.1

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