U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    transcription initiation factor IIE (TFIIE) alpha subunit family protein / general transcription factor TFIIE family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827829, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    transcription initiation factor IIE (TFIIE) alpha subunit family protein / general transcription factor TFIIE family protein
    Primary source
    TAIR:AT4G20810
    Locus tag
    AT4G20810
    See related
    Araport:AT4G20810
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F21C20.160; F21C20_160
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 4
    Exon count:
    8
    Sequence:
    Chromosome: 4; NC_003075.7 (11141427..11143597, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Leucine-rich repeat protein kinase family protein Neighboring gene FAD-binding Berberine family protein Neighboring gene FAD-binding Berberine family protein Neighboring gene FAD-binding Berberine family protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help
    NM_118199.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in transcription initiation at RNA polymerase II promoter IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    transcription initiation factor IIE (TFIIE) alpha subunit family protein / general transcription factor TFIIE family protein
    NP_193813.1
    • transcription initiation factor IIE (TFIIE) alpha subunit family protein / general transcription factor TFIIE family protein; FUNCTIONS IN: RNA polymerase II transcription factor activity, transcription initiation factor activity; INVOLVED IN: transcription initiation from RNA polymerase II promoter; LOCATED IN: transcription factor TFIIE complex; CONTAINS InterPro DOMAIN/s: Transcription factor TFE/TFIIEalpha, HTH domain (InterPro:IPR017919); BEST Arabidopsis thaliana protein match is: Transcription factor TFIIE, alpha subunit (TAIR:AT4G20340.1); Has 481 Blast hits to 473 proteins in 159 species: Archae - 3; Bacteria - 16; Metazoa - 170; Fungi - 133; Plants - 89; Viruses - 9; Other Eukaryotes - 61 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      11141427..11143597 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_118199.1 → NP_193813.1  transcription initiation factor IIE (TFIIE) alpha subunit family protein / general transcription factor TFIIE family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193813.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V515, A0A654FRE7, Q9SVG6
      Conserved Domains (1) summary
      cl30696
      Location:30 → 171
      TFIIE; Transcription initiation factor IIE
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Other Literature Sources
    Molecular Biology Databases
    Research Materials
    Tools