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    OBF5 OCS-element binding factor 5 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830587, updated on 18-Sep-2024

    Summary

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    Official Symbol
    OBF5
    Official Full Name
    OCS-element binding factor 5
    Primary source
    TAIR:AT5G06960
    Locus tag
    AT5G06960
    See related
    Araport:AT5G06960
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MOJ9.13; MOJ9_13; OCS-element binding factor 5; TGA5; TGACG MOTIF-BINDING FACTOR 5
    Summary
    Encodes a basic leucine zipper (B-ZIP) containing protein that interacts with NPR1 to promote expression of salicylic acid induced genes. Binds the ocs-element.
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    Genomic context

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    See OBF5 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    9
    Sequence:
    Chromosome: 5; NC_003076.8 (2154746..2157719)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene nucleolar-like protein Neighboring gene Leucine-rich repeat receptor-like protein kinase family protein Neighboring gene bZIP transcription factor family protein Neighboring gene plant/protein (DUF810) Neighboring gene uncharacterized protein Neighboring gene MIZU-KUSSEI-like protein (Protein of unknown function, DUF617)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Isolation and characterization of two related Arabidopsis ocs-element bZIP binding proteins. Zhang B, et al. Plant J, 1993 Oct. PMID 8252072
    2. Interactions between distinct types of DNA binding proteins enhance binding to ocs element promoter sequences. Zhang B, et al. Plant Cell, 1995 Dec. PMID 8718629, Free PMC Article
    3. Over-expression of TGA5, which encodes a bZIP transcription factor that interacts with NIM1/NPR1, confers SAR-independent resistance in Arabidopsis thaliana to Peronospora parasitica. Kim HS, et al. Plant J, 2002 Oct. PMID 12383081
    4. Arabidopsis thaliana class-II TGA transcription factors are essential activators of jasmonic acid/ethylene-induced defense responses. Zander M, et al. Plant J, 2010 Jan. PMID 19832945
    5. The Arabidopsis NPR1/NIM1 protein enhances the DNA binding activity of a subgroup of the TGA family of bZIP transcription factors. Després C, et al. Plant Cell, 2000 Feb. PMID 10662863, Free PMC Article

    See all (27) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001342914.1
    NM_120778.4
    NM_203016.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables DNA binding NAS
    Non-traceable Author Statement
    more info
    		  
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables identical protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within defense response to other organism TAS
    Traceable Author Statement
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within response to xenobiotic stimulus IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within salicylic acid mediated signaling pathway IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    OCS-element binding factor 5
    NP_196313.1
    • OCS-element binding factor 5 (OBF5); CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: TGACG motif-binding factor 6 (TAIR:AT3G12250.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    NP_974745.1
    • OCS-element binding factor 5 (OBF5); CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: TGACG motif-binding factor 6 (TAIR:AT3G12250.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      2154746..2157719
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120778.4 → NP_196313.1  OCS-element binding factor 5 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196313.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q39163, Q9FL50
      UniProtKB/TrEMBL
      A0A178UIF0, A0A5S9Y2S5
      Conserved Domains (3) summary
      cd14686
      Location:47 → 98
      bZIP; coiled coil [structural motif]
      pfam14144
      Location:128 → 203
      DOG1; Seed dormancy control
      cl21462
      Location:46 → 98
      bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain

    2. NM_203016.2 → NP_974745.1  OCS-element binding factor 5 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974745.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q39163, Q9FL50
      UniProtKB/TrEMBL
      A0A178UIF0, A0A5S9Y2S5
      Conserved Domains (3) summary
      cd14686
      Location:47 → 98
      bZIP; coiled coil [structural motif]
      pfam14144
      Location:128 → 203
      DOG1; Seed dormancy control
      cl21462
      Location:46 → 98
      bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain

    3. NM_001342914.1 → NP_001332658.1  OCS-element binding factor 5 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1R7T3A8
      Conserved Domains (3) summary
      cd14686
      Location:27 → 78
      bZIP; coiled coil [structural motif]
      pfam14144
      Location:108 → 183
      DOG1; Seed dormancy control
      cl21462
      Location:26 → 78
      bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q39163.2

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