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    binding protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824873, updated on 18-Sep-2024

    Summary

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    Official Full Name
    binding protein
    Primary source
    TAIR:AT3G57060
    Locus tag
    AT3G57060
    See related
    Araport:AT3G57060
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    16
    Sequence:
    Chromosome: 3; NC_003074.8 (21114798..21121160, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene response regulator 9 Neighboring gene cystathionine beta-lyase Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene Glutaredoxin family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Arabidopsis CAP-D proteins are required for correct chromatin organisation, growth and fertility. Schubert V, et al. Chromosoma, 2013 Dec. PMID 23929493
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. CAP-D2 is essential for viability, fertility and euchromatin organisation
      Title: The Arabidopsis CAP-D proteins are required for correct chromatin organisation, growth and fertility.
    Submit: New GeneRIF Correction

    General gene information

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    NM_001203185.1
    NM_001339840.1
    NM_115565.2

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    involved_in chromatin organization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in mitotic cell cycle IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in mitotic chromosome condensation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    binding protein
    NP_001190114.1
    • binding; FUNCTIONS IN: binding; INVOLVED IN: mitosis, chromosome condensation; LOCATED IN: nucleus, condensin complex; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Non-SMC condensin subunit, XCAP-D2/Cnd1 (InterPro:IPR007673), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT4G15890.1).
    NP_191265.2
    • binding; FUNCTIONS IN: binding; INVOLVED IN: mitosis, chromosome condensation; LOCATED IN: nucleus, condensin complex; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Non-SMC condensin subunit, XCAP-D2/Cnd1 (InterPro:IPR007673), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT4G15890.1); Has 13948 Blast hits to 8962 proteins in 742 species: Archae - 66; Bacteria - 1309; Metazoa - 5536; Fungi - 1705; Plants - 572; Viruses - 208; Other Eukaryotes - 4552 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      21114798..21121160 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115565.2 → NP_191265.2  binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191265.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XLQ4, A0A654FGI6
      Conserved Domains (4) summary
      COG5098
      Location:61 → 1156
      COG5098; Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
      pfam08202
      Location:1151 → 1270
      MIS13; Mis12-Mtw1 protein family
      pfam12717
      Location:980 → 1145
      Cnd1; non-SMC mitotic condensation complex subunit 1
      pfam12922
      Location:80 → 241
      Cnd1_N; non-SMC mitotic condensation complex subunit 1, N-term

    2. NM_001339840.1 → NP_001325687.1  binding protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A1I9LM04, F4J245, Q9M1J4
      UniProtKB/TrEMBL
      A0A5S9XLQ4, A0A654FGI6

    3. NM_001203185.1 → NP_001190114.1  binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190114.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XLQ4, A0A654FGI6, F4J246
      Conserved Domains (4) summary
      COG5098
      Location:61 → 1156
      COG5098; Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
      pfam08202
      Location:1151 → 1270
      MIS13; Mis12-Mtw1 protein family
      pfam12717
      Location:980 → 1145
      Cnd1; non-SMC mitotic condensation complex subunit 1
      pfam12922
      Location:80 → 241
      Cnd1_N; non-SMC mitotic condensation complex subunit 1, N-term
    Nucleotide Protein
    Heading Accession and Version

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