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    ARI5 RING/U-box superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837099, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ARI5
    Official Full Name
    RING/U-box superfamily protein
    Primary source
    TAIR:AT1G05890
    Locus tag
    AT1G05890
    See related
    Araport:AT1G05890
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ARABIDOPSIS ARIADNE 5; ARIADNE 5; ATARI5; T20M3.16; T20M3_16
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    Genomic context

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    See ARI5 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    16
    Sequence:
    Chromosome: 1; NC_003070.9 (1779256..1784675)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene hypothetical protein (DUF1685) Neighboring gene RING/U-box superfamily protein Neighboring gene uncharacterized protein Neighboring gene endonuclease III 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_100470.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ubiquitin-protein transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RING/U-box superfamily protein
    NP_001184920.1
    • ARIADNE 5 (ARI5); FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: IBR domain-containing protein (TAIR:AT2G31510.1).
    NP_172080.2
    • ARIADNE 5 (ARI5); FUNCTIONS IN: zinc ion binding, nucleic acid binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: IBR domain-containing protein (TAIR:AT2G31510.1); Has 3031 Blast hits to 3006 proteins in 232 species: Archae - 0; Bacteria - 0; Metazoa - 1283; Fungi - 592; Plants - 643; Viruses - 7; Other Eukaryotes - 506 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      1779256..1784675
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001197991.1 → NP_001184920.1  RING/U-box superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001184920.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4IAE4
      Conserved Domains (2) summary
      smart00647
      Location:243 → 305
      IBR; In Between Ring fingers
      pfam01485
      Location:327 → 366
      IBR; IBR domain, a half RING-finger domain

    2. NM_100470.5 → NP_172080.2  RING/U-box superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172080.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q84RR1, Q8L829, Q9MA37
      UniProtKB/TrEMBL
      A0A178W7Q7, A0A178WAN2, A0A5S9SUL8
      Conserved Domains (3) summary
      smart00647
      Location:201 → 263
      IBR; In Between Ring fingers
      cd16623
      Location:132 → 182
      RING-HC_RBR_TRIAD1_like; RING finger, HC subclass, found in two RING fingers and DRIL [double RING finger linked] 1 (TRIAD1), ankyrin repeat and IBR domain-containing protein 1 (ANKIB1) and similar proteins
      pfam01485
      Location:285 → 324
      IBR; IBR domain, a half RING-finger domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8L829.1

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