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    NAC016 NAC domain containing protein 16 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 840317, updated on 6-Oct-2023

    Summary

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    Gene symbol
    NAC016
    Gene description
    NAC domain containing protein 16
    Primary source
    Araport:AT1G34180
    Locus tag
    AT1G34180
    See related
    TAIR:AT1G34180
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    anac016; F23M19.14; F23M19_14; NAC domain containing protein 16
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    Genomic context

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    See NAC016 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    5
    Sequence:
    Chromosome: 1; NC_003070.9 (12448543..12451287)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene AUXIN RESPONSE FACTOR 13 Neighboring gene NAC domain containing protein 17 Neighboring gene Glyceraldehyde-3-phosphate dehydrogenase-like family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Arabidopsis Transcription Factor NAC016 Promotes Drought Stress Responses by Repressing AREB1 Transcription through a Trifurcate Feed-Forward Regulatory Loop Involving NAP. Sakuraba Y, et al. Plant Cell, 2015 Jun. PMID 26059204, Free PMC Article
    2. Mutation of the Arabidopsis NAC016 transcription factor delays leaf senescence. Kim YS, et al. Plant Cell Physiol, 2013 Oct. PMID 23926065
    3. Arabidopsis NAC016 promotes chlorophyll breakdown by directly upregulating STAYGREEN1 transcription. Sakuraba Y, et al. Plant Cell Rep, 2016 Jan. PMID 26441053
    4. Transcriptional regulation of nitrogen-associated metabolism and growth. Gaudinier A, et al. Nature, 2018 Nov. PMID 30356219
    5. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. NAC016 directly activates SGR1 expression in the leaf senescence regulatory cascade.
      Title: Arabidopsis NAC016 promotes chlorophyll breakdown by directly upregulating STAYGREEN1 transcription.
    2. promotes drought stress responses by repressing AREB1 transcription through a trifurcate feed-forward regulatory loop involving NAP
      Title: The Arabidopsis Transcription Factor NAC016 Promotes Drought Stress Responses by Repressing AREB1 Transcription through a Trifurcate Feed-Forward Regulatory Loop Involving NAP.
    3. Data suggest that NAC016 regulatory mechanisms promoting leaf senescence exhibit cross-talk with the salt and oxidative stress-responsive signaling pathways.
      Title: Mutation of the Arabidopsis NAC016 transcription factor delays leaf senescence.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001084179.1
    NM_001333089.1
    NM_001333090.1
    NM_103141.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of DNA-templated transcription IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in positive regulation of leaf senescence IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    NAC domain containing protein 16
    NP_001077648.1
    • NAC domain containing protein 16 (NAC016); CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 17 (TAIR:AT1G34190.1); Has 2852 Blast hits to 2834 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2852; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_564439.1
    • NAC domain containing protein 16 (NAC016); CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 17 (TAIR:AT1G34190.1); Has 2915 Blast hits to 2900 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2915; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      12448543..12451287
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_103141.4 → NP_564439.1  NAC domain containing protein 16 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564439.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A4FVP6, Q8LFG7, Q9XIC4
      UniProtKB/TrEMBL
      A0A178WDS7, A0A654EGF8
      Conserved Domains (1) summary
      pfam02365
      Location:19 → 60
      NAM; No apical meristem (NAM) protein

    2. NM_001333089.1 → NP_001322918.1  NAC domain containing protein 16 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AVH2

    3. NM_001333090.1 → NP_001322919.1  NAC domain containing protein 16 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AVL5

    4. NM_001084179.1 → NP_001077648.1  NAC domain containing protein 16 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077648.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WDS7, A0A654EGF8
      Conserved Domains (1) summary
      pfam02365
      Location:18 → 155
      NAM; No apical meristem (NAM) protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A4FVP6.1

    Gene LinkOut

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