ATG8C Ubiquitin-like superfamily protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Symbol: ATG8C
Official Full Name: Ubiquitin-like superfamily protein
Primary source: TAIR:AT1G62040
Locus tag: AT1G62040
See related: Araport:AT1G62040
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: autophagy 8c; F8K4.23; F8K4_23
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Genomic context

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See ATG8C in Genome Data Viewer

Location:: chromosome: 1

Exon count:: 5

Sequence:: Chromosome: 1; NC_003070.9 (22932760..22934549)

Chromosome 1 - NC_003070.9 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Homology

Orthologs from OrthoDB

NM_104884.5

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables protein binding	IPI Inferred from Physical Interaction more info	PubMed

Component	Evidence Code	Pubs
located_in autophagosome	IDA Inferred from Direct Assay more info	PubMed
located_in mitochondrion	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: Ubiquitin-like superfamily protein

NP_001319291.1

autophagy 8c (ATG8C); FUNCTIONS IN: microtubule binding; INVOLVED IN: autophagy; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Light chain 3 (LC3) (InterPro:IPR004241); BEST Arabidopsis thaliana protein match is: Ubiquitin-like superfamily protein (TAIR:AT4G21980.2).

NP_176395.1

autophagy 8c (ATG8C); CONTAINS InterPro DOMAIN/s: Light chain 3 (LC3) (InterPro:IPR004241); BEST Arabidopsis thaliana protein match is: Ubiquitin-like superfamily protein (TAIR:AT2G05630.1); Has 1515 Blast hits to 1513 proteins in 273 species: Archae - 0; Bacteria - 0; Metazoa - 720; Fungi - 178; Plants - 302; Viruses - 3; Other Eukaryotes - 312 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003070.9 Reference assembly

Range

22932760..22934549

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_001334017.1 → NP_001319291.1 Ubiquitin-like superfamily protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

F4HX35
NM_104884.5 → NP_176395.1 Ubiquitin-like superfamily protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_176395.1

Status: REVIEWED

UniProtKB/Swiss-Prot

O80708, Q8S927

UniProtKB/TrEMBL

A0A178W309, A0A5S9WSV9

Conserved Domains (1) summary

cd16128
Location:12 → 114

Ubl_ATG8; ubiquitin-like (Ubl) domain found in Saccharomyces cerevisiae Atg8p and related proteins; sub-family of the autophagy-related 8 (ATG8) family