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    Signal recognition particle, SRP9/SRP14 subunit [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824071, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Signal recognition particle, SRP9/SRP14 subunit
    Primary source
    TAIR:AT3G49100
    Locus tag
    AT3G49100
    See related
    Araport:AT3G49100
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    5
    Sequence:
    Chromosome: 3; NC_003074.8 (18196308..18198492)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ATP-binding protein Neighboring gene U-box domain-containing protein kinase family protein Neighboring gene transmembrane protein, putative (DUF677) Neighboring gene Ribosomal protein S5 domain 2-like superfamily protein Neighboring gene peroxidase CA Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Interactomics of Qa-SNARE in Arabidopsis thaliana. Fujiwara M, et al. Plant Cell Physiol, 2014 Apr. PMID 24556609
    2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    3. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_114769.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables 7S RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in SRP-dependent cotranslational protein targeting to membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in negative regulation of translational elongation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytosol HDA PubMed 

    General protein information

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    Preferred Names
    Signal recognition particle, SRP9/SRP14 subunit
    NP_190479.1
    • Signal recognition particle, SRP9/SRP14 subunit; FUNCTIONS IN: 7S RNA binding, signal recognition particle binding; INVOLVED IN: negative regulation of translational elongation, SRP-dependent cotranslational protein targeting to membrane; LOCATED IN: signal recognition particle; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Signal recognition particle, SRP9/SRP14 subunit (InterPro:IPR009018), Signal recognition particle, SRP9 subunit (InterPro:IPR008832); Has 222 Blast hits to 222 proteins in 93 species: Archae - 0; Bacteria - 0; Metazoa - 140; Fungi - 16; Plants - 42; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      18196308..18198492
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001339398.1 → NP_001327913.1  Signal recognition particle, SRP9/SRP14 subunit [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SMU7
      UniProtKB/TrEMBL
      A0A178VCR3, A0A384LJN4, Q0WS60
      Conserved Domains (1) summary
      pfam05486
      Location:4 → 67
      SRP9-21; Signal recognition particle 9 kDa protein (SRP9)

    2. NM_114769.4 → NP_190479.1  Signal recognition particle, SRP9/SRP14 subunit [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190479.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SMU7
      UniProtKB/TrEMBL
      A0A178VCR3, A0A384LJN4, Q0WS60
      Conserved Domains (1) summary
      pfam05486
      Location:4 → 67
      SRP9-21; Signal recognition particle 9 kDa protein (SRP9)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SMU7.1

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