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    [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828150, updated on 22-Aug-2024

    Summary

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    Primary source
    TAIR:AT4G02880
    Locus tag
    AT4G02880
    See related
    Araport:AT4G02880
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T5J8.20; T5J8_20
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    9
    Sequence:
    Chromosome: 4; NC_003075.7 (1274465..1278718)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene B3 domain protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Ubiquitin family protein Neighboring gene ncRNA Neighboring gene ERD (early-responsive to dehydration stress) family protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_116522.4

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    ELKS/Rab6-interacting/CAST family protein
    NP_001190665.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G03290.2).
    NP_192197.2
    • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G03290.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      1274465..1278718
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001203736.1 → NP_001190665.1  ELKS/Rab6-interacting/CAST family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190665.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2EWZ8, F4JHW4
      Conserved Domains (1) summary
      COG1196
      Location:280 → 482
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    2. NM_116522.4 → NP_192197.2  ELKS/Rab6-interacting/CAST family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_192197.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V1K7, A0A5S9XPC6, A0A7G2EVM7, Q8VY14
      Conserved Domains (1) summary
      COG1196
      Location:276 → 478
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    Nucleotide Protein
    Heading Accession and Version

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