U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    XBAT32 uncharacterized protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835882, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    XBAT32
    Official Full Name
    uncharacterized protein
    Primary source
    TAIR:AT5G57740
    Locus tag
    AT5G57740
    See related
    Araport:AT5G57740
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MRI1.10; MRI1_10; XB3 ortholog 2 in Arabidopsis thaliana
    Summary
    Encodes a RING-type E3 ligase XBAT32. Mediates the proteasomal degradation of the ethylene biosynthetic enzyme, 1-aminocyclopropane-1-carboxylate synthase 7.
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See XBAT32 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    10
    Sequence:
    Chromosome: 5; NC_003076.8 (23394585..23397650, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene AP2/B3-like transcriptional factor family protein Neighboring gene ncRNA Neighboring gene RING/U-box superfamily protein Neighboring gene uncharacterized protein Neighboring gene auxin canalization protein (DUF828)

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Further analysis of XBAT32, an Arabidopsis RING E3 ligase, involved in ethylene biosynthesis. Prasad ME, et al. Plant Signal Behav, 2010 Nov. PMID 21051934, Free PMC Article
    2. The ubiquitin ligase XBAT32 regulates lateral root development in Arabidopsis. Nodzon LA, et al. Plant J, 2004 Dec. PMID 15584963
    3. The Arabidopsis RING-type E3 ligase XBAT32 mediates the proteasomal degradation of the ethylene biosynthetic enzyme, 1-aminocyclopropane-1-carboxylate synthase 7. Lyzenga WJ, et al. Plant J, 2012 Jul. PMID 22339729
    4. Arabidopsis RING E3 ligase XBAT32 regulates lateral root production through its role in ethylene biosynthesis. Prasad ME, et al. Plant Physiol, 2010 Aug. PMID 20511490, Free PMC Article
    5. Arabidopsis G-protein interactome reveals connections to cell wall carbohydrates and morphogenesis. Klopffleisch K, et al. Mol Syst Biol, 2011 Sep 27. PMID 21952135, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. ACS7 is turned over in a 26S proteasome-dependent manner and that degradation of ACS7 requires the E3 ligase XBAT32.
      Title: The Arabidopsis RING-type E3 ligase XBAT32 mediates the proteasomal degradation of the ethylene biosynthetic enzyme, 1-aminocyclopropane-1-carboxylate synthase 7.
    2. XBAT32 may play a role in ethylene mediated response to abiotic stresses.
      Title: Further analysis of XBAT32, an Arabidopsis RING E3 ligase, involved in ethylene biosynthesis.
    3. XBAT32 plays an essential role in ethylene biosynthesis as a negative regulator of ACS protein abundance.
      Title: Arabidopsis RING E3 ligase XBAT32 regulates lateral root production through its role in ethylene biosynthesis.
    4. XBAT32 is a novel ubiquitin ligase required for lateral root initiation. Mutation in XBAT32 causes a number of phenotypes including severe defects in lateral root production. XBAT32 gene is expressed abundantly in vascular system of the primary root.
      Title: The ubiquitin ligase XBAT32 regulates lateral root development in Arabidopsis.
    Submit: New GeneRIF Correction

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help
    NM_125157.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables ubiquitin-protein transferase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in lateral root formation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in negative regulation of ethylene biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in protein autoubiquitination IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in protein ubiquitination IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in response to auxin IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within ubiquitin-dependent protein catabolic process IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    uncharacterized protein
    NP_200582.3
    • XB3 ortholog 2 in Arabidopsis thaliana (XBAT32); FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: XB3 ortholog 3 in Arabidopsis thaliana (TAIR:AT5G07270.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      23394585..23397650 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_125157.3 → NP_200582.3  uncharacterized protein AT5G57740 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200582.3

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q6NLQ8, Q9FHG9
      UniProtKB/TrEMBL
      A0A178UH83, A0A654GCH7
      Conserved Domains (2) summary
      sd00045
      Location:52 → 81
      ANK; ANK repeat [structural motif]
      pfam12796
      Location:55 → 142
      Ank_2; Ankyrin repeats (3 copies)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6NLQ8.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools