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    DEAD box RNA helicase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819825, updated on 18-Sep-2024

    Summary

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    Official Full Name
    DEAD box RNA helicase family protein
    Primary source
    TAIR:AT3G06480
    Locus tag
    AT3G06480
    See related
    Araport:AT3G06480
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F24P17.2; F24P17_2
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    8
    Sequence:
    Chromosome: 3; NC_003074.8 (1985338..1990245, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ubiquitin family protein Neighboring gene GNS1/SUR4 membrane protein family Neighboring gene GNS1/SUR4 membrane protein family Neighboring gene pyruvate dehydrogenase kinase Neighboring gene myb domain protein 108

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins. Carter C, et al. Plant Cell, 2004 Dec. PMID 15539469, Free PMC Article
    2. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_111523.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables RNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plant-type vacuole HDA PubMed 

    General protein information

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    Preferred Names
    DEAD box RNA helicase family protein
    NP_187299.1
    • DEAD box RNA helicase family protein; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), WW/Rsp5/WWP (InterPro:IPR001202), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD box RNA helicase 1 (TAIR:AT3G01540.4); Has 132761 Blast hits to 82344 proteins in 3707 species: Archae - 865; Bacteria - 47475; Metazoa - 37917; Fungi - 12444; Plants - 11781; Viruses - 886; Other Eukaryotes - 21393 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      1985338..1990245 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001337659.1 → NP_001327723.1  DEAD box RNA helicase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LT69, A0A7G2EKI5
      Conserved Domains (2) summary
      PTZ00110
      Location:402 → 752
      PTZ00110; helicase; Provisional
      pfam00397
      Location:22 → 52
      WW; WW domain

    2. NM_111523.3 → NP_187299.1  DEAD box RNA helicase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187299.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SQV1
      UniProtKB/TrEMBL
      A0A178VH14, A0A5S9X9N1
      Conserved Domains (2) summary
      PTZ00110
      Location:402 → 814
      PTZ00110; helicase; Provisional
      pfam00397
      Location:22 → 52
      WW; WW domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SQV1.1

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