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    GATA6 GATA transcription factor 6 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824272, updated on 18-Sep-2024

    Summary

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    Official Symbol
    GATA6
    Official Full Name
    GATA transcription factor 6
    Primary source
    TAIR:AT3G51080
    Locus tag
    AT3G51080
    See related
    Araport:AT3G51080
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    GATA transcription factor 6
    Summary
    Encodes a member of the GATA factor family of zinc finger transcription factors.
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    Genomic context

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    See GATA6 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    3
    Sequence:
    Chromosome: 3; NC_003074.8 (18973126..18974892)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Lateral root primordium (LRP) protein-like protein Neighboring gene ncRNA Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Neighboring gene ncRNA Neighboring gene coiled-coil 90B-like protein (DUF1640) Neighboring gene altered inheritance of mitochondria protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Conservation, convergence, and divergence of light-responsive, circadian-regulated, and tissue-specific expression patterns during evolution of the Arabidopsis GATA gene family. Manfield IW, et al. Plant Physiol, 2007 Feb. PMID 17208962, Free PMC Article
    2. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
    3. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_114968.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in positive regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within response to light stimulus IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    GATA transcription factor 6
    NP_190677.1
    • GATA transcription factor 6 (GATA6); CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Transcription factor, GATA, plant (InterPro:IPR016679), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: GATA transcription factor 5 (TAIR:AT5G66320.2); Has 1500 Blast hits to 1468 proteins in 185 species: Archae - 0; Bacteria - 0; Metazoa - 110; Fungi - 554; Plants - 766; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      18973126..18974892
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_114968.4 → NP_190677.1  GATA transcription factor 6 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190677.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SD38
      UniProtKB/TrEMBL
      A0A178VKT0, A0A654FHQ2
      Conserved Domains (1) summary
      smart00401
      Location:221 → 271
      ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SD38.1

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