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    SWIB/MDM2 domain superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829579, updated on 18-Sep-2024

    Summary

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    Official Full Name
    SWIB/MDM2 domain superfamily protein
    Primary source
    TAIR:AT4G34290
    Locus tag
    AT4G34290
    See related
    Araport:AT4G34290
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F10M10.60; F10M10_60
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    2
    Sequence:
    Chromosome: 4; NC_003075.7 (16410791..16412385)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene TIP41-like family protein Neighboring gene transducin family protein / WD-40 repeat family protein Neighboring gene Cupredoxin superfamily protein Neighboring gene alpha/beta-Hydrolases superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_119594.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasma membrane HDA PubMed 

    General protein information

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    Preferred Names
    SWIB/MDM2 domain superfamily protein
    NP_195155.1
    • SWIB/MDM2 domain superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SWIB/MDM2 domain (InterPro:IPR003121), SWIB domain (InterPro:IPR019835); BEST Arabidopsis thaliana protein match is: SWIB/MDM2 domain superfamily protein (TAIR:AT2G14880.1); Has 1224 Blast hits to 1123 proteins in 258 species: Archae - 0; Bacteria - 216; Metazoa - 147; Fungi - 184; Plants - 430; Viruses - 12; Other Eukaryotes - 235 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      16410791..16412385
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_119594.3 → NP_195155.1  SWIB/MDM2 domain superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195155.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UX40, Q94F02, Q9SYZ4
      Conserved Domains (1) summary
      pfam02201
      Location:70 → 143
      SWIB; SWIB/MDM2 domain
    Nucleotide Protein
    Heading Accession and Version

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