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    FRIGIDA-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821815, updated on 18-Sep-2024

    Summary

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    Official Full Name
    FRIGIDA-like protein
    Primary source
    TAIR:AT3G22440
    Locus tag
    AT3G22440
    See related
    Araport:AT3G22440
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    3
    Sequence:
    Chromosome: 3; NC_003074.8 (7959753..7962371)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene RNA recognition motif XS domain protein Neighboring gene uncharacterized protein Neighboring gene miscRNA Neighboring gene Ribosomal L18p/L5e family protein Neighboring gene O-acetylserine (thiol) lyase (OAS-TL) isoform A2 Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene prefoldin 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713
    3. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_113143.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    FRIGIDA-like protein
    NP_566709.1
    • FRIGIDA-like protein; CONTAINS InterPro DOMAIN/s: Frigida-like (InterPro:IPR012474); BEST Arabidopsis thaliana protein match is: FRIGIDA-like protein (TAIR:AT4G14900.1); Has 1385 Blast hits to 1327 proteins in 123 species: Archae - 0; Bacteria - 9; Metazoa - 139; Fungi - 70; Plants - 1142; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      7959753..7962371
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_113143.3 → NP_566709.1  FRIGIDA-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566709.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LUV4
      UniProtKB/TrEMBL
      A0A178V8B2, A0A5S9XEK9
      Conserved Domains (2) summary
      PHA03378
      Location:391 → 501
      PHA03378; EBNA-3B; Provisional
      pfam07899
      Location:123 → 414
      Frigida; Frigida-like protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LUV4.1

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