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    IDD4 indeterminate(ID)-domain 4 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 814739, updated on 18-Sep-2024

    Summary

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    Official Symbol
    IDD4
    Official Full Name
    indeterminate(ID)-domain 4
    Primary source
    TAIR:AT2G02080
    Locus tag
    AT2G02080
    See related
    Araport:AT2G02080
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtIDD4; F5O4.15; F5O4_15; indeterminate(ID)-domain 4
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    Genomic context

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    See IDD4 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    4
    Sequence:
    Chromosome: 2; NC_003071.7 (518079..521737, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Nucleotide-diphospho-sugar transferase family protein Neighboring gene indeterminate(ID)-domain 5 Neighboring gene ncRNA Neighboring gene SNF2 domain-containing protein / helicase domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A Chimeric IDD4 Repressor Constitutively Induces Immunity in Arabidopsis via the Modulation of Salicylic Acid and Jasmonic Acid Homeostasis. Vï Lz R, et al. Plant Cell Physiol, 2019 Jul 1. PMID 30989238
    2. INDETERMINATE-DOMAIN 4 (IDD4) coordinates immune responses with plant-growth in Arabidopsis thaliana. Völz R, et al. PLoS Pathog, 2019 Jan. PMID 30677094, Free PMC Article
    3. Transcriptional control of tissue formation throughout root development. Moreno-Risueno MA, et al. Science, 2015 Oct 23. PMID 26494755, Free PMC Article
    4. DELLA protein functions as a transcriptional activator through the DNA binding of the indeterminate domain family proteins. Yoshida H, et al. Proc Natl Acad Sci U S A, 2014 May 27. PMID 24821766, Free PMC Article
    5. Large-scale identification of gibberellin-related transcription factors defines group VII ETHYLENE RESPONSE FACTORS as functional DELLA partners. Marín-de la Rosa N, et al. Plant Physiol, 2014 Oct. PMID 25118255, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Induces Immunity via the Modulation of Salicylic Acid and Jasmonic Acid Homeostasis
      Title: A Chimeric IDD4 Repressor Constitutively Induces Immunity in Arabidopsis via the Modulation of Salicylic Acid and Jasmonic Acid Homeostasis.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001124782.1
    NM_001335092.1
    NM_001335093.1
    NM_001335094.1
    NM_001335095.1
    NM_126269.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables sequence-specific DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within asymmetric cell division IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within pattern recognition receptor signaling pathway IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in positive regulation of DNA-templated transcription IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within root development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    indeterminate(ID)-domain 4
    NP_001318178.1
    • indeterminate(ID)-domain 4 (IDD4); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; LOCATED IN: intracellular; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087), Zinc finger, double-stranded RNA binding (InterPro:IPR022755); BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT1G14580.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_178317.2
    • indeterminate(ID)-domain 4 (IDD4); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087), Zinc finger, double-stranded RNA binding (InterPro:IPR022755); BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT1G14580.2); Has 51298 Blast hits to 20221 proteins in 333 species: Archae - 2; Bacteria - 165; Metazoa - 48118; Fungi - 358; Plants - 855; Viruses - 7; Other Eukaryotes - 1793 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      518079..521737 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_126269.3 → NP_178317.2  indeterminate(ID)-domain 4 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_178317.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8GYC1, Q9ZUL4
      UniProtKB/TrEMBL
      A0A7G2E7Y3
      Conserved Domains (3) summary
      sd00017
      Location:85 → 105
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:188 → 204
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13912
      Location:82 → 105
      zf-C2H2_6; C2H2-type zinc finger

    2. NM_001335093.1 → NP_001325406.1  indeterminate(ID)-domain 4 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8GYC1, Q9ZUL4
      UniProtKB/TrEMBL
      A0A7G2E7Y3

    3. NM_001335094.1 → NP_001325405.1  indeterminate(ID)-domain 4 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8GYC1, Q9ZUL4
      UniProtKB/TrEMBL
      A0A7G2E7Y3

    4. NM_001124782.1 → NP_001118254.1  indeterminate(ID)-domain 4 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001118254.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654ER97
      Conserved Domains (2) summary
      sd00017
      Location:8 → 28
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:111 → 127
      ZF_C2H2; C2H2 Zn finger [structural motif]

    5. NM_001335092.1 → NP_001318178.1  indeterminate(ID)-domain 4 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654ER97

    6. NM_001335095.1 → NP_001325407.1  indeterminate(ID)-domain 4 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8GYC1, Q9ZUL4
      UniProtKB/TrEMBL
      A0A7G2E7Y3
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8GYC1.1

    Gene LinkOut

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