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    PIT1 RING/FYVE/PHD zinc finger superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828146, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PIT1
    Official Full Name
    RING/FYVE/PHD zinc finger superfamily protein
    Primary source
    TAIR:AT4G02075
    Locus tag
    AT4G02075
    See related
    Araport:AT4G02075
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    pitchoun 1
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    Genomic context

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    See PIT1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    7
    Sequence:
    Chromosome: 4; NC_003075.7 (913334..916509, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene tRNA-His Neighboring gene Minichromosome maintenance (MCM2/3/5) family protein Neighboring gene MUTS homolog 6 Neighboring gene secretion-associated RAS super family 2 Neighboring gene multidrug resistance protein ABC transporter family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A high content in lipid-modified peripheral proteins and integral receptor kinases features in the arabidopsis plasma membrane proteome. Marmagne A, et al. Mol Cell Proteomics, 2007 Nov. PMID 17644812
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198
    3. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001340359.1
    NM_001340360.1
    NM_116439.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in Golgi apparatus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasma membrane HDA PubMed 

    General protein information

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    Preferred Names
    RING/FYVE/PHD zinc finger superfamily protein
    NP_567222.1
    • pitchoun 1 (PIT1); FUNCTIONS IN: zinc ion binding; LOCATED IN: plasma membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3675 (InterPro:IPR022143), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT1G02610.1); Has 1559 Blast hits to 1554 proteins in 183 species: Archae - 0; Bacteria - 0; Metazoa - 678; Fungi - 105; Plants - 585; Viruses - 28; Other Eukaryotes - 163 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      913334..916509 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_116439.3 → NP_567222.1  RING/FYVE/PHD zinc finger superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567222.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XP42, A0A654FL29, Q9XF50
      Conserved Domains (3) summary
      smart00744
      Location:20 → 65
      RINGv; The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins
      cd16495
      Location:20 → 65
      RING_CH-C4HC3_MARCH; RING-CH finger (C4HC3-type) [structural motif]
      pfam12428
      Location:72 → 176
      DUF3675; Protein of unknown function (DUF3675)

    2. NM_001340360.1 → NP_001329351.1  RING/FYVE/PHD zinc finger superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B7F7, A0A5S9XP42

    3. NM_001340359.1 → NP_001329350.1  RING/FYVE/PHD zinc finger superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B7F8
    Nucleotide Protein
    Heading Accession and Version

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