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    ATSYP24 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 840119, updated on 22-Aug-2024

    Summary

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    Official Symbol
    ATSYP24
    Primary source
    TAIR:AT1G32270
    Locus tag
    AT1G32270
    See related
    Araport:AT1G32270
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F27G20.2; SYNTAXIN 24; SYP24
    Summary
    member of SYP2 Gene Family
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    7
    Sequence:
    Chromosome: 1; NC_003070.9 (11642593..11645237)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Calcium-binding EF-hand family protein Neighboring gene envelope glycoprotein Neighboring gene Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein Neighboring gene D-arabinono-1,4-lactone oxidase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Arabidopsis genome. An abundance of soluble N-ethylmaleimide-sensitive factor adaptor protein receptors. Sanderfoot AA, et al. Plant Physiol, 2000 Dec. PMID 11115874, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    acts_upstream_of_or_within intra-Golgi vesicle-mediated transport TAS
    Traceable Author Statement
    more info
    		 PubMed 
    involved_in vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    syntaxin
    NP_174506.1
    • ATSYP24; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727), t-SNARE (InterPro:IPR010989), Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: Syntaxin/t-SNARE family protein (TAIR:AT5G46860.1); Has 1336 Blast hits to 1336 proteins in 217 species: Archae - 0; Bacteria - 9; Metazoa - 416; Fungi - 220; Plants - 605; Viruses - 0; Other Eukaryotes - 86 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      11642593..11645237
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001333003.1 → NP_001320542.1  syntaxin [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AN48

    2. NM_102960.2 → NP_174506.1  syntaxin [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_174506.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9C615, Q9LQN2
      Conserved Domains (3) summary
      cd15840
      Location:268 → 325
      SNARE_Qa; SNARE motif, subgroup Qa
      pfam03168
      Location:35 → 137
      LEA_2; Late embryogenesis abundant protein
      pfam14523
      Location:154 → 219
      Syntaxin_2; Syntaxin-like protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9C615.1

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