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    VTE5 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830328, updated on 22-Aug-2024

    Summary

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    Official Symbol
    VTE5
    Primary source
    TAIR:AT5G04490
    Locus tag
    AT5G04490
    See related
    Araport:AT5G04490
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T32M21.90; T32M21_90; vitamin E pathway gene 5
    Summary
    Encodes a protein with phytol kinase activity involved in tocopherol biosynthesis.
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    6
    Sequence:
    Chromosome: 5; NC_003076.8 (1279577..1281746)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene UDP-Glycosyltransferase superfamily protein Neighboring gene glycosyltransferase family protein 47 Neighboring gene 3'-phosphoinositide-dependent protein kinase 1 Neighboring gene 3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Arabidopsis vitamin E pathway gene5-1 mutant reveals a critical role for phytol kinase in seed tocopherol biosynthesis. Valentin HE, et al. Plant Cell, 2006 Jan. PMID 16361393, Free PMC Article
    2. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    NM_001342778.1
    NM_120531.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables phytol kinase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in vitamin E biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within vitamin E biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    phytol kinase 1 VTE5
    NP_196069.1
    • vitamin E pathway gene 5 (VTE5); FUNCTIONS IN: phytol kinase activity, phosphatidate cytidylyltransferase activity; INVOLVED IN: vitamin E biosynthetic process, phospholipid biosynthetic process; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidate cytidylyltransferase (InterPro:IPR000374); BEST Arabidopsis thaliana protein match is: Phosphatidate cytidylyltransferase family protein (TAIR:AT5G58560.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      1279577..1281746
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120531.3 → NP_196069.1  phytol kinase 1 VTE5 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196069.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q84WC0, Q8LF61, Q9LZ76
      UniProtKB/TrEMBL
      A0A5S9Y1C3, A0A7G2FCC4
      Conserved Domains (1) summary
      COG0170
      Location:103 → 300
      SEC59; Dolichol kinase [Posttranslational modification, protein turnover, chaperones]

    2. NM_001342778.1 → NP_001330248.1  phytol kinase 1 VTE5 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BA70
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LZ76.1

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