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    GDCH glycine decarboxylase complex H [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818104, updated on 18-Sep-2024

    Summary

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    Official Symbol
    GDCH
    Official Full Name
    glycine decarboxylase complex H
    Primary source
    TAIR:AT2G35370
    Locus tag
    AT2G35370
    See related
    Araport:AT2G35370
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    glycine decarboxylase complex H; GLYCINE DECARBOXYLASE COMPLEX H PROTEIN
    Summary
    Encodes glycine decarboxylase complex H protein. Involved in photorespiration.
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    Genomic context

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    See GDCH in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    4
    Sequence:
    Chromosome: 2; NC_003071.7 (14891041..14892298)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene poltergeist like 1 Neighboring gene ubiquitin family protein Neighboring gene Peroxidase superfamily protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Central functions of the lumenal and peripheral thylakoid proteome of Arabidopsis determined by experimentation and genome-wide prediction. Peltier JB, et al. Plant Cell, 2002 Jan. PMID 11826309, Free PMC Article
    2. Analysis of the Arabidopsis nuclear proteome and its response to cold stress. Bae MS, et al. Plant J, 2003 Dec. PMID 14617066
    3. Isolation and identification of ubiquitin-related proteins from Arabidopsis seedlings. Igawa T, et al. J Exp Bot, 2009. PMID 19429840, Free PMC Article
    4. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article
    5. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_129089.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables glycine dehydrogenase (decarboxylating) activity TAS
    Traceable Author Statement
    more info
    		  
    Process Evidence Code Pubs
    involved_in glycine decarboxylation via glycine cleavage system IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within glycine decarboxylation via glycine cleavage system TAS
    Traceable Author Statement
    more info
    		  
    acts_upstream_of_or_within photorespiration TAS
    Traceable Author Statement
    more info
    		  
    Component Evidence Code Pubs
    located_in cytosol HDA PubMed 
    located_in endoplasmic reticulum HDA PubMed 
    part_of glycine cleavage complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  
    located_in mitochondrion TAS
    Traceable Author Statement
    more info
    		  
    located_in nucleus HDA PubMed 
    located_in thylakoid HDA PubMed 

    General protein information

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    Preferred Names
    glycine decarboxylase complex H
    NP_181080.1
    • glycine decarboxylase complex H (GDCH); FUNCTIONS IN: glycine dehydrogenase (decarboxylating) activity; INVOLVED IN: glycine decarboxylation via glycine cleavage system, photorespiration; LOCATED IN: thylakoid, mitochondrion, nucleus, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: 2-oxo acid dehydrogenase, lipoyl-binding site (InterPro:IPR003016), Single hybrid motif (InterPro:IPR011053), Glycine cleavage H-protein (InterPro:IPR002930), Glycine cleavage H-protein, subgroup (InterPro:IPR017453); BEST Arabidopsis thaliana protein match is: Single hybrid motif superfamily protein (TAIR:AT1G32470.1); Has 7139 Blast hits to 7139 proteins in 2207 species: Archae - 168; Bacteria - 4552; Metazoa - 189; Fungi - 126; Plants - 207; Viruses - 0; Other Eukaryotes - 1897 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      14891041..14892298
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_129089.2 → NP_181080.1  glycine decarboxylase complex H [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_181080.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P25855, Q0WR60
      UniProtKB/TrEMBL
      A0A178VV72, A0A5S9WI52, A0A5S9X4A3
      Conserved Domains (1) summary
      PRK01202
      Location:35 → 160
      PRK01202; glycine cleavage system protein GcvH
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P25855.1

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