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    PNPT1 polyribonucleotide nucleotidyltransferase 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 718973, updated on 17-Aug-2024

    Summary

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    Official Symbol
    PNPT1provided by VGNC
    Official Full Name
    polyribonucleotide nucleotidyltransferase 1provided by VGNC
    Primary source
    VGNC:VGNC:76095
    See related
    Ensembl:ENSMMUG00000007003
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See PNPT1 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    28
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 13 NC_041766.1 (52953485..53012114)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 13 NC_027905.1 (56616649..56675465, complement)

    Chromosome 13 - NC_041766.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114671706 Neighboring gene microRNA mir-216a Neighboring gene EGF containing fibulin extracellular matrix protein 1 Neighboring gene protein phosphatase 4 regulatory subunit 3B Neighboring gene small nucleolar RNA SNORA12 Neighboring gene cilia and flagella associated protein 36

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 3'-5'-RNA exonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables polyribonucleotide nucleotidyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mitochondrial RNA 3'-end processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mitochondrial mRNA catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    polyribonucleotide nucleotidyltransferase 1, mitochondrial
    XP_014967885.1
    XP_014967887.1
    XP_028687485.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041766.1 Reference Mmul_10 Primary Assembly

      Range
      52953485..53012114
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015112399.2 → XP_014967885.1  polyribonucleotide nucleotidyltransferase 1, mitochondrial isoform X1

      UniProtKB/TrEMBL
      F7DK85, G7NA34, I0FW17
      Related
      ENSMMUP00000009189.4, ENSMMUT00000009784.4
      Conserved Domains (6) summary
      smart00316
      Location:679 → 750
      S1; Ribosomal protein S1-like RNA-binding domain
      cd11363
      Location:49 → 273
      RNase_PH_PNPase_1; Polyribonucleotide nucleotidyltransferase, repeat 1
      cd11364
      Location:366 → 596
      RNase_PH_PNPase_2; Polyribonucleotide nucleotidyltransferase, repeat 2
      PRK11824
      Location:49 → 752
      PRK11824; polynucleotide phosphorylase/polyadenylase; Provisional
      pfam03726
      Location:282 → 363
      PNPase; Polyribonucleotide nucleotidyltransferase, RNA binding domain
      cl00098
      Location:605 → 664
      KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...

    2. XM_028831652.1 → XP_028687485.1  polyribonucleotide nucleotidyltransferase 1, mitochondrial isoform X3

      UniProtKB/TrEMBL
      G7NA34
      Conserved Domains (1) summary
      PRK11824
      Location:49 → 689
      PRK11824; polynucleotide phosphorylase/polyadenylase; Provisional

    3. XM_015112401.2 → XP_014967887.1  polyribonucleotide nucleotidyltransferase 1, mitochondrial isoform X2

      UniProtKB/TrEMBL
      G7NA34
      Conserved Domains (6) summary
      smart00316
      Location:599 → 670
      S1; Ribosomal protein S1-like RNA-binding domain
      cd11363
      Location:1 → 193
      RNase_PH_PNPase_1; Polyribonucleotide nucleotidyltransferase, repeat 1
      cd11364
      Location:286 → 516
      RNase_PH_PNPase_2; Polyribonucleotide nucleotidyltransferase, repeat 2
      PRK11824
      Location:1 → 672
      PRK11824; polynucleotide phosphorylase/polyadenylase; Provisional
      pfam03726
      Location:202 → 283
      PNPase; Polyribonucleotide nucleotidyltransferase, RNA binding domain
      cl00098
      Location:525 → 584
      KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    Nucleotide Protein
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