U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    Ankrd40 ankyrin repeat domain 40 [ Mus musculus (house mouse) ]

    Gene ID: 71452, updated on 2-Nov-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Ankrd40provided by MGI
    Official Full Name
    ankyrin repeat domain 40provided by MGI
    Primary source
    MGI:MGI:1918702
    See related
    Ensembl:ENSMUSG00000020864 AllianceGenome:MGI:1918702
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gcap15; 1110011C06Rik; 5530600A18Rik
    Summary
    Is expressed in genitourinary system. Orthologous to human ANKRD40 (ankyrin repeat domain 40). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Ubiquitous expression in cerebellum adult (RPKM 37.5), lung adult (RPKM 34.2) and 28 other tissues See more
    Orthologs
    human all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Ankrd40 in Genome Data Viewer
    Location:
    11 D; 11 58.9 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (94218827..94232673)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (94328001..94341847)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene ANKRD40 C-terminal like Neighboring gene LUC7-like 3 (S. cerevisiae) Neighboring gene STARR-positive B cell enhancer ABC_E5270 Neighboring gene STARR-positive B cell enhancer ABC_E7046 Neighboring gene ATP-binding cassette, sub-family C member 3 Neighboring gene predicted gene, 51871 Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:94235659-94235882 Neighboring gene STARR-seq mESC enhancer starr_30466 Neighboring gene STARR-seq mESC enhancer starr_30467 Neighboring gene calcium channel, voltage-dependent, T type, alpha 1G subunit Neighboring gene predicted gene, 51872

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. T-box transcription factor 3 governs a transcriptional program for the function of the mouse atrioventricular conduction system. Mohan RA, et al. Proc Natl Acad Sci U S A, 2020 Aug 4. PMID 32675240, Free PMC Article
    2. Novel cDNA clones obtained by antibody screening of a mouse cerebellar cDNA expression library. Kambouris M, et al. Brain Res Mol Brain Res, 1994 Sep. PMID 7808216
    3. Construction of long-transcript enriched cDNA libraries from submicrogram amounts of total RNAs by a universal PCR amplification method. Piao Y, et al. Genome Res, 2001 Sep. PMID 11544199, Free PMC Article
    4. Database resources of the National Center for Biotechnology Information. Wheeler DL, et al. Nucleic Acids Res, 2001 Jan 1. PMID 11125038, Free PMC Article
    5. Mouse brain organization revealed through direct genome-scale TF expression analysis. Gray PA, et al. Science, 2004 Dec 24. PMID 15618518

    See all (19) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

    Go to the top of the page Help

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Clone Names

    • MGC29030

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    ankyrin repeat domain-containing protein 40
    Names
    granule cell antiserum positive 15

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_027799.2 → NP_082075.2  ankyrin repeat domain-containing protein 40 isoform 1

      See identical proteins and their annotated locations for NP_082075.2

      Status: VALIDATED

      Source sequence(s)
      AL645965
      Consensus CDS
      CCDS25253.2
      UniProtKB/Swiss-Prot
      Q5SUE8, Q5SUF0, Q8R595, Q9CU71
      Related
      ENSMUSP00000103448.3, ENSMUST00000107818.9
      Conserved Domains (4) summary
      cd00204
      Location:14 → 93
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam12796
      Location:48 → 93
      Ank_2; Ankyrin repeats (3 copies)
      pfam13637
      Location:14 → 64
      Ank_4; Ankyrin repeats (many copies)
      sd00045
      Location:14 → 40
      ANK; ANK repeat [structural motif]

    2. NM_146024.1 → NP_666136.1  ankyrin repeat domain-containing protein 40 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AK017451, AL645965, CN835214
      Consensus CDS
      CCDS36283.1
      UniProtKB/Swiss-Prot
      Q5SUE8
      Related
      ENSMUSP00000021227.6, ENSMUST00000021227.6
      Conserved Domains (4) summary
      cd00204
      Location:14 → 93
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam12796
      Location:48 → 93
      Ank_2; Ankyrin repeats (3 copies)
      pfam13637
      Location:14 → 64
      Ank_4; Ankyrin repeats (many copies)
      sd00045
      Location:14 → 40
      ANK; ANK repeat [structural motif]

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      94218827..94232673
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5SUE8.1 GenPept UniProtKB/Swiss-Prot:Q5SUE8

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
    Molecular Biology Databases
    Research Materials
    Tools