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    Plac8l1 PLAC8-like 1 [ Mus musculus (house mouse) ]

    Gene ID: 69401, updated on 2-Nov-2024

    Summary

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    Official Symbol
    Plac8l1provided by MGI
    Official Full Name
    PLAC8-like 1provided by MGI
    Primary source
    MGI:MGI:1916651
    See related
    Ensembl:ENSMUSG00000059455 AllianceGenome:MGI:1916651
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1700009N18Rik; 1700015M15Rik
    Summary
    Orthologous to human PLAC8L1 (PLAC8 like 1). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Restricted expression toward testis adult (RPKM 45.6) See more
    Orthologs
    human all
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    Genomic context

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    See Plac8l1 in Genome Data Viewer
    Location:
    18 B3; 18 22.35 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 18 NC_000084.7 (42311740..42329774, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 18 NC_000084.6 (42178675..42196709, complement)

    Chromosome 18 - NC_000084.7Genomic Context describing neighboring genes Neighboring gene SH3 domain containing ring finger 2 Neighboring gene STARR-seq mESC enhancer starr_44432 Neighboring gene cystatin domain containing 7 Neighboring gene predicted gene, 18086 Neighboring gene high mobility group box 1-like pseudogene Neighboring gene leucyl-tRNA synthetase 1 Neighboring gene STARR-seq mESC enhancer starr_44434 Neighboring gene ribosomal protein S19, pseudogene 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Identification and integrative analysis of 28 novel genes specifically expressed and developmentally regulated in murine spermatogenic cells. Hong S, et al. J Biol Chem, 2005 Mar 4. PMID 15613475
    2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    PLAC8-like protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_027072.1 → NP_081348.1  PLAC8-like protein 1

      See identical proteins and their annotated locations for NP_081348.1

      Status: VALIDATED

      Source sequence(s)
      AK005800, AK006002, AV254807, AV265480
      Consensus CDS
      CCDS50266.1
      UniProtKB/Swiss-Prot
      Q08EJ0, Q9DAB1
      Related
      ENSMUSP00000080111.3, ENSMUST00000081374.4
      Conserved Domains (1) summary
      TIGR01571
      Location:70 → 158
      A_thal_Cys_rich; uncharacterized Cys-rich domain

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000084.7 Reference GRCm39 C57BL/6J

      Range
      42311740..42329774 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q08EJ0.2 GenPept UniProtKB/Swiss-Prot:Q08EJ0

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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