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    Krtcap3 keratinocyte associated protein 3 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 683980, updated on 2-Nov-2024

    Summary

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    Official Symbol
    Krtcap3provided by RGD
    Official Full Name
    keratinocyte associated protein 3provided by RGD
    Primary source
    RGD:1596516
    See related
    EnsemblRapid:ENSRNOG00000047941 AllianceGenome:RGD:1596516
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to be located in membrane. Orthologous to human KRTCAP3 (keratinocyte associated protein 3). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Lung (RPKM 54.6), Kidney (RPKM 44.5) and 7 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Krtcap3 in Genome Data Viewer
    Location:
    6q14
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 6 NC_086024.1 (30840906..30842500, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 6 NC_051341.1 (25120938..25122522, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 6 NC_005105.4 (26485126..26486695, complement)

    Chromosome 6 - NC_086024.1Genomic Context describing neighboring genes Neighboring gene glucokinase regulator Neighboring gene fibronectin type III domain containing 4 Neighboring gene intraflagellar transport 172 Neighboring gene nuclear receptor binding protein 1 Neighboring gene protein phosphatase, Mg2+/Mn2+ dependent, 1G

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    keratinocyte-associated protein 3
    Names
    KCP-3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001109674.1 → NP_001103144.1  keratinocyte-associated protein 3

      See identical proteins and their annotated locations for NP_001103144.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473947
      UniProtKB/Swiss-Prot
      Q497B3
      UniProtKB/TrEMBL
      A0A8I5ZZ03, A6HA63
      Related
      ENSRNOP00000063910.1, ENSRNOT00000073236.3
      Conserved Domains (1) summary
      pfam12304
      Location:19 → 205
      BCLP; Beta-casein like protein

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086024.1 Reference GRCr8

      Range
      30840906..30842500 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039112927.2 → XP_038968855.1  keratinocyte-associated protein 3 isoform X1

      UniProtKB/TrEMBL
      A0A8I5ZX93, A0A8I5ZZ03
      Related
      ENSRNOP00000082458.1, ENSRNOT00000117566.2
      Conserved Domains (1) summary
      pfam12304
      Location:19 → 185
      BCLP; Beta-casein like protein
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q497B3.1 GenPept UniProtKB/Swiss-Prot:Q497B3

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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