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    NIPBL-DT NIPBL divergent transcript [ Homo sapiens (human) ]

    Gene ID: 646719, updated on 17-Aug-2024

    Summary

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    Official Symbol
    NIPBL-DTprovided by HGNC
    Official Full Name
    NIPBL divergent transcriptprovided by HGNC
    Primary source
    HGNC:HGNC:51293
    See related
    Ensembl:ENSG00000285967 AllianceGenome:HGNC:51293
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    NIPBL-AS; NIPBL-AS1
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    Genomic context

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    See NIPBL-DT in Genome Data Viewer
    Location:
    5p13.2
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (36871361..36876694, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (37121191..37126524, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (36871463..36876796, complement)

    Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene NANOG hESC enhancer GRCh37_chr5:36590466-36591251 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22479 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr5:36619081-36619595 Neighboring gene ribosomal protein L39 pseudogene 22 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr5:36646148-36647347 Neighboring gene solute carrier family 1 member 3 Neighboring gene SLC1A3 antisense RNA 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22480 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15973 Neighboring gene Sharpr-MPRA regulatory region 9536 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22481 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22483 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22482 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15974 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22484 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15975 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15976 Neighboring gene keratin 18 pseudogene 31 Neighboring gene NIPBL cohesin loading factor Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:37013539-37014053 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:37014054-37014567 Neighboring gene ciliogenesis and planar polarity effector complex subunit 1 Neighboring gene ribosomal protein S4X pseudogene 6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Regulation of the cohesin-loading factor NIPBL: Role of the lncRNA NIPBL-AS1 and identification of a distal enhancer element. Zuin J, et al. PLoS Genet, 2017 Dec. PMID 29261648, Free PMC Article
    2. Expression of non-protein-coding antisense RNAs in genomic regions related to autism spectrum disorders. Velmeshev D, et al. Mol Autism, 2013 Sep 4. PMID 24007600, Free PMC Article
    3. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Markers

    Other Names

    • NIPBL antisense RNA 1 (head to head)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_046262.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC026741, AI800212
      Related
      ENST00000649921.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

      Range
      36871361..36876694 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060929.1 Alternate T2T-CHM13v2.0

      Range
      37121191..37126524 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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