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    NCL nucleolin [ Canis lupus familiaris (dog) ]

    Gene ID: 608445, updated on 17-Aug-2024

    Summary

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    Official Symbol
    NCLprovided by VGNC
    Official Full Name
    nucleolinprovided by VGNC
    Primary source
    VGNC:VGNC:43657
    See related
    Ensembl:ENSCAFG00845023546
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See NCL in Genome Data Viewer
    Location:
    chromosome: 25
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 25 NC_051829.1 (43588384..43598029, complement)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 25 NC_006607.4 (43889863..43899381, complement)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 25 NC_049246.1 (43514740..43524256, complement)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 25 NC_049285.1 (43516186..43525614, complement)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 25 NC_049766.1 (43359026..43368541, complement)

    Chromosome 25 - NC_051829.1Genomic Context describing neighboring genes Neighboring gene UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7 Neighboring gene 26S proteasome regulatory subunit 4-like Neighboring gene protein SET-like Neighboring gene small nucleolar RNA SNORA75 Neighboring gene small nucleolar RNA SNORD20 Neighboring gene small nucleolar RNA SNORD82 Neighboring gene uncharacterized LOC111092428 Neighboring gene neuromedin U receptor 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Nucleolin as a potential biomarker for canine malignant neoplasia. Cruz C, et al. Res Vet Sci, 2021 Mar. PMID 33077166

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Nucleolin as a potential biomarker for canine malignant neoplasia.
      Title: Nucleolin as a potential biomarker for canine malignant neoplasia.
    Submit: New GeneRIF Correction

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LOW QUALITY PROTEIN: nucleolin; nucleolin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051829.1 Reference ROS_Cfam_1.0

      Range
      43588384..43598029 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038435764.1 → XP_038291692.1  LOW QUALITY PROTEIN: nucleolin

      UniProtKB/TrEMBL
      A0A8I3PNX7
      Related
      ENSCAFP00845032585.1, ENSCAFT00845041560.1
      Conserved Domains (4) summary
      cd12403
      Location:313 → 387
      RRM1_NCL; RNA recognition motif 1 (RRM1) found in vertebrate nucleolin
      cd12404
      Location:396 → 471
      RRM2_NCL; RNA recognition motif 2 (RRM2) found in vertebrate nucleolin
      cd12405
      Location:491 → 563
      RRM3_NCL; RNA recognition motif 3 (RRM3) found in vertebrate nucleolin
      cd12406
      Location:578 → 655
      RRM4_NCL; RNA recognition motif 4 (RRM4) found in vertebrate nucleolin

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049285.1 Alternate UMICH_Zoey_3.1

      Range
      43516186..43525614 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038510694.1 → XP_038366622.1  nucleolin

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049766.1 Alternate UNSW_CanFamBas_1.0

      Range
      43359026..43368541 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038638469.1 → XP_038494397.1  nucleolin

      Conserved Domains (4) summary
      cd12403
      Location:312 → 386
      RRM1_NCL; RNA recognition motif 1 (RRM1) found in vertebrate nucleolin
      cd12404
      Location:395 → 470
      RRM2_NCL; RNA recognition motif 2 (RRM2) found in vertebrate nucleolin
      cd12405
      Location:490 → 562
      RRM3_NCL; RNA recognition motif 3 (RRM3) found in vertebrate nucleolin
      cd12406
      Location:577 → 654
      RRM4_NCL; RNA recognition motif 4 (RRM4) found in vertebrate nucleolin

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049246.1 Alternate UU_Cfam_GSD_1.0

      Range
      43514740..43524256 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038574175.1 → XP_038430103.1  nucleolin

      UniProtKB/TrEMBL
      A0A8C0RN90, A0A8C0Z633
      Conserved Domains (4) summary
      cd12403
      Location:312 → 386
      RRM1_NCL; RNA recognition motif 1 (RRM1) found in vertebrate nucleolin
      cd12404
      Location:395 → 470
      RRM2_NCL; RNA recognition motif 2 (RRM2) found in vertebrate nucleolin
      cd12405
      Location:490 → 562
      RRM3_NCL; RNA recognition motif 3 (RRM3) found in vertebrate nucleolin
      cd12406
      Location:577 → 654
      RRM4_NCL; RNA recognition motif 4 (RRM4) found in vertebrate nucleolin

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006607.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      43889863..43899381 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_845384.6 → XP_850477.3  nucleolin

      UniProtKB/TrEMBL
      A0A8C0RN90, A0A8C0Z633
      Conserved Domains (4) summary
      cd12403
      Location:312 → 386
      RRM1_NCL; RNA recognition motif 1 (RRM1) found in vertebrate nucleolin
      cd12404
      Location:395 → 470
      RRM2_NCL; RNA recognition motif 2 (RRM2) found in vertebrate nucleolin
      cd12405
      Location:490 → 562
      RRM3_NCL; RNA recognition motif 3 (RRM3) found in vertebrate nucleolin
      cd12406
      Location:577 → 654
      RRM4_NCL; RNA recognition motif 4 (RRM4) found in vertebrate nucleolin
    Nucleotide Protein
    Heading Accession and Version

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