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    uncharacterized protein [ Chlamydomonas reinhardtii ]

    Gene ID: 5728724, updated on 18-Sep-2024

    Summary

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    Official Full Name
    uncharacterized protein
    Primary source
    Phytozome:Cre12.g483700
    Locus tag
    CHLRE_12g483700v5
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Chlamydomonas reinhardtii (strain: CC-503 cw92 mt+)
    Lineage
    Eukaryota; Viridiplantae; Chlorophyta; core chlorophytes; Chlorophyceae; CS clade; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
    Old locus tag
    CHLREDRAFT_186002
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    Genomic context

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    Location:
    chromosome: 12
    Exon count:
    9
    Sequence:
    Chromosome: 12; NC_057015.1 (55946..61637)

    Chromosome 12 - NC_057015.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_057015.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. An intermolecular disulfide-based light switch for chloroplast psbD gene expression in Chlamydomonas reinhardtii. Schwarz C, et al. Plant J, 2012 Nov. PMID 22725132
    2. Synthesis of the D2 protein of photosystem II in Chlamydomonas is controlled by a high molecular mass complex containing the RNA stabilization factor Nac2 and the translational activator RBP40. Schwarz C, et al. Plant Cell, 2007 Nov. PMID 18055611, Free PMC Article
    3. The Chlamydomonas genome reveals the evolution of key animal and plant functions. Merchant SS, et al. Science, 2007 Oct 12. PMID 17932292, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Light control of D2 synthesis depends on dynamic formation of the Nac2/RBP40 complex.
      Title: An intermolecular disulfide-based light switch for chloroplast psbD gene expression in Chlamydomonas reinhardtii.
    2. RBP40 is shown to be part of a chloroplast multisubunit complex that also contains the RNA stability factor Nac2. RBP40 binds to the D2 protein PsbD 5'UTR in a Nac2-dependent fashion. RBP40 specifically affects the initiation of D2 synthesis. [RBP40]
      Title: Synthesis of the D2 protein of photosystem II in Chlamydomonas is controlled by a high molecular mass complex containing the RNA stabilization factor Nac2 and the translational activator RBP40.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables single-stranded DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mitochondrial DNA replication IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrial nucleoid IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_057015.1 Reference assembly

      Range
      55946..61637
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_043067800.1 → XP_042917895.1  uncharacterized protein CHLRE_12g483700v5 [Chlamydomonas reinhardtii]

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      Q6EMK7

    2. XM_001703112.2 → XP_001703164.1  uncharacterized protein CHLRE_12g483700v5 [Chlamydomonas reinhardtii]

      See identical proteins and their annotated locations for XP_001703164.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      Q6EMK7
    Nucleotide Protein
    Heading Accession and Version

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