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    kcnj5 potassium inwardly rectifying channel subfamily J member 5 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 549655, updated on 4-Nov-2024

    Summary

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    Official Symbol
    kcnj5provided by Xenbase
    Official Full Name
    potassium inwardly rectifying channel subfamily J member 5provided by Xenbase
    Primary source
    Xenbase:XB-GENE-5919506
    See related
    Ensembl:ENSXETG00000030612 AllianceGenome:Xenbase:XB-GENE-5919506
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    cir; girk4; katp1; kcnj6; kir3.4
    Summary
    Predicted to enable G-protein activated inward rectifier potassium channel activity. Predicted to act upstream of or within monoatomic ion transmembrane transport and potassium ion transport. Predicted to be located in membrane. Predicted to be part of monoatomic ion channel complex. [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See kcnj5 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 7 NC_030683.2 (72330817..72400337)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 7 NC_030683.1 (66690490..66764144)

    Chromosome 7 - NC_030683.2Genomic Context describing neighboring genes Neighboring gene v-ets avian erythroblastosis virus E26 oncogene homolog 1 Neighboring gene Fli-1 proto-oncogene, ETS transcription factor Neighboring gene potassium inwardly rectifying channel subfamily J member 1 Neighboring gene uncharacterized LOC116412214 Neighboring gene Rho GTPase activating protein 32 Neighboring gene U4 spliceosomal RNA

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables G-protein activated inward rectifier potassium channel activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within monoatomic ion transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within potassium ion transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of monoatomic ion channel complex IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    G protein-activated inward rectifier potassium channel 4
    Names
    potassium channel, inwardly rectifying subfamily J, member 5
    potassium inwardly-rectifying channel, subfamily J, member 6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001016901.2 → NP_001016901.1  G protein-activated inward rectifier potassium channel 4

      Status: PROVISIONAL

      Source sequence(s)
      CR848526
      UniProtKB/TrEMBL
      A0A803K530, A0A8J0PJ74
      Conserved Domains (2) summary
      pfam01007
      Location:54 → 193
      IRK; Inward rectifier potassium channel
      pfam17655
      Location:200 → 369
      IRK_C; Inward rectifier potassium channel C-terminal domain

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030683.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      72330817..72400337
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031905101.1 → XP_031760961.1  G protein-activated inward rectifier potassium channel 4 isoform X1

      UniProtKB/TrEMBL
      A0A6I8PTT1, A0A803K530
      Related
      ENSXETP00000062108.3, ENSXETT00000066311.3
      Conserved Domains (2) summary
      pfam01007
      Location:90 → 229
      IRK; Inward rectifier potassium channel
      pfam17655
      Location:236 → 405
      IRK_C; Inward rectifier potassium channel C-terminal domain

    2. XM_031905104.1 → XP_031760964.1  G protein-activated inward rectifier potassium channel 4 isoform X1

      UniProtKB/TrEMBL
      A0A6I8PTT1, A0A803K530
      Conserved Domains (2) summary
      pfam01007
      Location:90 → 229
      IRK; Inward rectifier potassium channel
      pfam17655
      Location:236 → 405
      IRK_C; Inward rectifier potassium channel C-terminal domain

    3. XM_031905102.1 → XP_031760962.1  G protein-activated inward rectifier potassium channel 4 isoform X1

      UniProtKB/TrEMBL
      A0A6I8PTT1, A0A803K530
      Conserved Domains (2) summary
      pfam01007
      Location:90 → 229
      IRK; Inward rectifier potassium channel
      pfam17655
      Location:236 → 405
      IRK_C; Inward rectifier potassium channel C-terminal domain

    4. XM_031905103.1 → XP_031760963.1  G protein-activated inward rectifier potassium channel 4 isoform X1

      UniProtKB/TrEMBL
      A0A6I8PTT1, A0A803K530
      Conserved Domains (2) summary
      pfam01007
      Location:90 → 229
      IRK; Inward rectifier potassium channel
      pfam17655
      Location:236 → 405
      IRK_C; Inward rectifier potassium channel C-terminal domain

    5. XM_031905106.1 → XP_031760966.1  G protein-activated inward rectifier potassium channel 4 isoform X2

      UniProtKB/TrEMBL
      A0A803JV58, A0A8J1JWL8
      Conserved Domains (2) summary
      pfam01007
      Location:87 → 226
      IRK; Inward rectifier potassium channel
      pfam17655
      Location:233 → 402
      IRK_C; Inward rectifier potassium channel C-terminal domain

    6. XM_031905107.1 → XP_031760967.1  G protein-activated inward rectifier potassium channel 4 isoform X3

      UniProtKB/TrEMBL
      A0A803JG72, A0A803K530
      Related
      ENSXETP00000111910.1, ENSXETT00000116821.1
      Conserved Domains (2) summary
      pfam01007
      Location:70 → 209
      IRK; Inward rectifier potassium channel
      pfam17655
      Location:216 → 385
      IRK_C; Inward rectifier potassium channel C-terminal domain

    7. XM_031905108.1 → XP_031760968.1  G protein-activated inward rectifier potassium channel 4 isoform X4

      UniProtKB/TrEMBL
      A0A803K530, A0A8J0PJ74
      Conserved Domains (2) summary
      pfam01007
      Location:54 → 193
      IRK; Inward rectifier potassium channel
      pfam17655
      Location:200 → 369
      IRK_C; Inward rectifier potassium channel C-terminal domain
    Nucleotide Protein Strain
    Heading Accession and Version

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