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    LOC541626 ferredoxin [ Zea mays ]

    Gene ID: 541626, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC541626
    Gene description
    ferredoxin
    Locus tag
    ZEAMMB73_Zm00001d042049
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Zea mays
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
    Also known as
    L-FNRII; GRMZM2G059083
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    Genomic context

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    See LOC541626 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 3 NC_050098.1 (149357107..149359360, complement)
    102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 3 NC_024461.2 (148586147..148588386, complement)

    Chromosome 3 - NC_050098.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103650714 Neighboring gene ferredoxin--NADP reductase, leaf isozyme 1 - pseudogene Neighboring gene uncharacterized LOC100275802 Neighboring gene putative inactive leucine-rich repeat receptor-like protein kinase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. N-terminal structure of maize ferredoxin:NADP+ reductase determines recruitment into different thylakoid membrane complexes. Twachtmann M, et al. Plant Cell, 2012 Jul. PMID 22805436, Free PMC Article
    2. Differential interaction of maize root ferredoxin:NADP(+) oxidoreductase with photosynthetic and non-photosynthetic ferredoxin isoproteins. Onda Y, et al. Plant Physiol, 2000 Jul. PMID 10889253, Free PMC Article
    3. Anchoring 9,371 maize expressed sequence tagged unigenes to the bacterial artificial chromosome contig map by two-dimensional overgo hybridization. Gardiner J, et al. Plant Physiol, 2004 Apr. PMID 15020742, Free PMC Article
    4. The B73 maize genome: complexity, diversity, and dynamics. Schnable PS, et al. Science, 2009 Nov 20. PMID 19965430
    5. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. Soderlund C, et al. PLoS Genet, 2009 Nov. PMID 19936069, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The crystal structures of all three ferredoxin:NADP(+) reductase (FNRs) were solved, revealing major structural differences at the N-terminal domain and dimer interface.
      Title: N-terminal structure of maize ferredoxin:NADP+ reductase determines recruitment into different thylakoid membrane complexes.
    Submit: New GeneRIF Correction

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ferredoxin
    Names
    ferredoxin--NADP reductase, leaf isozyme

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001111381.1 → NP_001104851.1  ferredoxin

      See identical proteins and their annotated locations for NP_001104851.1

      Status: PROVISIONAL

      Source sequence(s)
      AB035645
      UniProtKB/TrEMBL
      B4FN63, Q9SLP5
      Conserved Domains (1) summary
      PLN03115
      Location:41 → 368
      PLN03115; ferredoxin--NADP(+) reductase; Provisional

    RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Genomic

    1. NC_050098.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

      Range
      149357107..149359360 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_020550045.2 → XP_020405634.1  ferredoxin isoform X1

      UniProtKB/TrEMBL
      A0A804N7C8, B4FN63
      Conserved Domains (1) summary
      cl27655
      Location:41 → 342
      FAD_binding_1; FAD binding domain
    Nucleotide Protein
    Heading Accession and Version

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