U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    HMGB4 high mobility group box 4 [ Bos taurus (domestic cattle) ]

    Gene ID: 539195, updated on 4-Oct-2024

    Summary

    Official Symbol
    HMGB4provided by VGNC
    Official Full Name
    high mobility group box 4provided by VGNC
    Primary source
    VGNC:VGNC:29876
    See related
    BGD:BT29968; Ensembl:ENSBTAG00000000335
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See HMGB4 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 3 NC_037330.1 (111927002..111927609, complement)

    Chromosome 3 - NC_037330.1Genomic Context describing neighboring genes Neighboring gene transfer RNA cysteine (anticodon ACA) Neighboring gene chromosome 3 C1orf94 homolog Neighboring gene CUB and Sushi multiple domains 2 Neighboring gene U6 spliceosomal RNA Neighboring gene zinc finger and SCAN domain containing 20

    Genomic regions, transcripts, and products

    Genomic Sequence:
    NC_037330.1 Chromosome 3 Reference ARS-UCD2.0 Primary Assembly

    General protein information

    Preferred Names
    high mobility group protein B4

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001040562.3NP_001035652.1  high mobility group protein B4

      See identical proteins and their annotated locations for NP_001035652.1

      Status: VALIDATED

      Source sequence(s)
      BC109790
      UniProtKB/Swiss-Prot
      Q32L34
      Related
      ENSBTAP00000000438.4, ENSBTAT00000000438.5
      Conserved Domains (2) summary
      cd01390
      Location:93158
      HMGB-UBF_HMG-box; HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone ...
      cl00082
      Location:878
      HMG-box; High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I ...

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037330.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      111927002..111927609 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)