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    SNRNP70 small nuclear ribonucleoprotein U1 subunit 70 [ Bos taurus (domestic cattle) ]

    Gene ID: 535113, updated on 4-Oct-2024

    Summary

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    Official Symbol
    SNRNP70provided by VGNC
    Official Full Name
    small nuclear ribonucleoprotein U1 subunit 70provided by VGNC
    Primary source
    VGNC:VGNC:35073
    See related
    BGD:BT21754; Ensembl:ENSBTAG00000048800
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    SNRP70
    Orthologs
    human mouse all
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    Genomic context

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    See SNRNP70 in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 18 NC_037345.1 (55604510..55618992)

    Chromosome 18 - NC_037345.1Genomic Context describing neighboring genes Neighboring gene neurotrophin 4 Neighboring gene potassium voltage-gated channel subfamily A member 7 Neighboring gene uncharacterized LOC101903913 Neighboring gene lin-7 homolog B, crumbs cell polarity complex component Neighboring gene uncharacterized LOC101903620 Neighboring gene PTPRF interacting protein alpha 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037345.1 Chromosome 18 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Markers

    Homology

    Clone Names

    • MGC138058

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables U1 snRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of U1 snRNP IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U2-type prespliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of precatalytic spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    U1 small nuclear ribonucleoprotein 70 kDa
    Names
    U1 snRNP 70 kDa
    U1-70K
    small nuclear ribonucleoprotein 70kDa (U1)
    small nuclear ribonucleoprotein 70kDa polypeptide (RNP antigen)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001076046.2 → NP_001069514.1  U1 small nuclear ribonucleoprotein 70 kDa

      See identical proteins and their annotated locations for NP_001069514.1

      Status: PROVISIONAL

      Source sequence(s)
      BC114762
      UniProtKB/Swiss-Prot
      Q1RMR2
      Related
      ENSBTAP00000002587.7, ENSBTAT00000002587.7
      Conserved Domains (2) summary
      pfam12220
      Location:3 → 93
      U1snRNP70_N; U1 small nuclear ribonucleoprotein of 70kDa MW N terminal
      cd12236
      Location:102 → 187
      RRM_snRNP70; RNA recognition motif (RRM) found in U1 small nuclear ribonucleoprotein 70 kDa (U1-70K) and similar proteins

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037345.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      55604510..55618992
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005219315.5 → XP_005219372.1  U1 small nuclear ribonucleoprotein 70 kDa isoform X2

      See identical proteins and their annotated locations for XP_005219372.1

      Conserved Domains (2) summary
      pfam12220
      Location:3 → 93
      U1snRNP70_N; U1 small nuclear ribonucleoprotein of 70kDa MW N terminal
      cd12236
      Location:102 → 187
      RRM_snRNP70; RNA recognition motif (RRM) found in U1 small nuclear ribonucleoprotein 70 kDa (U1-70K) and similar proteins

    2. XM_059876833.1 → XP_059732816.1  U1 small nuclear ribonucleoprotein 70 kDa isoform X1

      UniProtKB/Swiss-Prot
      Q1RMR2
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q1RMR2.1 GenPept UniProtKB/Swiss-Prot:Q1RMR2

    Gene LinkOut

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