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    ATG5 autophagy related 5 [ Bos taurus (domestic cattle) ]

    Gene ID: 532686, updated on 4-Oct-2024

    Summary

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    Official Symbol
    ATG5provided by VGNC
    Official Full Name
    autophagy related 5provided by VGNC
    Primary source
    VGNC:VGNC:56361
    See related
    BGD:BT28451; Ensembl:ENSBTAG00000005400
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See ATG5 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 9 NC_037336.1 (43654734..43807560)

    Chromosome 9 - NC_037336.1Genomic Context describing neighboring genes Neighboring gene reticulon 4 interacting protein 1 Neighboring gene crystallin beta-gamma domain containing 1 Neighboring gene transfer RNA cysteine (anticodon ACA) Neighboring gene small ribosomal subunit protein eS1-like Neighboring gene small ribosomal subunit protein eS1-like Neighboring gene PR/SET domain 1 Neighboring gene large ribosomal subunit protein eL6-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037336.1 Chromosome 9 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Markers

    Homology

    Clone Names

    • MGC127005

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in C-terminal protein lipidation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in autophagosome assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in autophagy of mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cellular response to nitrogen starvation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in nucleophagy IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Atg12-Atg5-Atg16 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in phagophore assembly site membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    autophagy protein 5
    Names
    ATG5 autophagy related 5 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001034579.2 → NP_001029751.2  autophagy protein 5

      See identical proteins and their annotated locations for NP_001029751.2

      Status: PROVISIONAL

      Source sequence(s)
      BC102770
      UniProtKB/Swiss-Prot
      Q3MQ24, Q3SZN7
      Related
      ENSBTAP00000007100.5, ENSBTAT00000007100.5
      Conserved Domains (1) summary
      pfam04106
      Location:79 → 270
      APG5; Autophagy protein Apg5

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037336.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      43654734..43807560
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024996697.2 → XP_024852465.1  autophagy protein 5 isoform X1

      Conserved Domains (1) summary
      pfam04106
      Location:79 → 225
      APG5; Autophagy protein Apg5

    2. XM_059889749.1 → XP_059745732.1  autophagy protein 5 isoform X3

      UniProtKB/TrEMBL
      A0AAA9TJZ7
      Related
      ENSBTAP00000097501.1, ENSBTAT00000100112.1

    3. XM_059889750.1 → XP_059745733.1  autophagy protein 5 isoform X4

    4. XM_024996699.2 → XP_024852467.1  autophagy protein 5 isoform X2

      UniProtKB/TrEMBL
      A0AAA9S6Y5
      Related
      ENSBTAP00000079673.1, ENSBTAT00000076203.2
      Conserved Domains (1) summary
      pfam04106
      Location:79 → 225
      APG5; Autophagy protein Apg5

    5. XM_024996700.2 → XP_024852468.1  autophagy protein 5 isoform X5

      UniProtKB/Swiss-Prot
      Q3MQ24, Q3SZN7
      Conserved Domains (1) summary
      pfam04106
      Location:79 → 270
      APG5; Autophagy protein Apg5

    6. XM_024996702.2 → XP_024852470.1  autophagy protein 5 isoform X7

      UniProtKB/TrEMBL
      A0AAA9TEQ7
      Related
      ENSBTAP00000097083.1, ENSBTAT00000118388.1
      Conserved Domains (1) summary
      pfam04106
      Location:1 → 192
      APG5; Autophagy protein Apg5

    7. XM_024996698.2 → XP_024852466.1  autophagy protein 5 isoform X1

      Conserved Domains (1) summary
      pfam04106
      Location:79 → 225
      APG5; Autophagy protein Apg5

    8. XM_059889751.1 → XP_059745734.1  autophagy protein 5 isoform X4

    9. XM_024996701.2 → XP_024852469.1  autophagy protein 5 isoform X6

      Conserved Domains (1) summary
      pfam04106
      Location:1 → 100
      APG5; Autophagy protein Apg5

    10. XM_059889753.1 → XP_059745736.1  autophagy protein 5 isoform X6

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q3MQ24.2 GenPept UniProtKB/Swiss-Prot:Q3MQ24

    Gene LinkOut

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