NEW
Try the new Transcript table
These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001278167.2 → NP_001265096.1 mitochondrial tRNA methylthiotransferase CDK5RAP1 isoform c
See identical proteins and their annotated locations for NP_001265096.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) uses an alternate in-frame splice site in the coding region compared to variant 1. It encodes isoform c which is shorter compared to isoform a.
- Source sequence(s)
-
AK222745, DA028522
- UniProtKB/TrEMBL
- B4DI01, Q53H36
- Conserved Domains (3) summary
-
- PRK14329
Location:88 → 573
- PRK14329; (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
- pfam00919
Location:101 → 204
- UPF0004; Uncharacterized protein family UPF0004
- pfam01938
Location:500 → 574
- TRAM; TRAM domain
-
NM_001278168.2 → NP_001265097.1 mitochondrial tRNA methylthiotransferase CDK5RAP1 isoform d
See identical proteins and their annotated locations for NP_001265097.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) lacks an alternate in-frame exon in the coding region compared to variant 1. It encodes isoform d which is shorter compared to isoform a.
- Source sequence(s)
-
AA721451, BC001215, BM834342, DC427896
- Consensus CDS
-
CCDS63255.1
- UniProtKB/TrEMBL
- A0A0S2Z592, B4DI01
- Related
- ENSP00000341840.5, ENST00000339269.5
- Conserved Domains (3) summary
-
- PRK14329
Location:88 → 497
- PRK14329; (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
- pfam00919
Location:101 → 204
- UPF0004; Uncharacterized protein family UPF0004
- pfam01938
Location:424 → 498
- TRAM; TRAM domain
-
NM_001278169.1 → NP_001265098.1 mitochondrial tRNA methylthiotransferase CDK5RAP1 isoform e
Status: REVIEWED
- Description
- Transcript Variant: This variant (5) differs in the 5' UTR and has multiple coding region differences compared to variant 1. These differences cause translation initiation at an alternate AUG and result in an isoform (e) with a distinct and shorter N-terminus compared to isoform a.
- Source sequence(s)
-
AA721451, AK292075, DC427896
- UniProtKB/TrEMBL
-
B4DI01
- Conserved Domains (3) summary
-
- PRK14329
Location:61 → 547
- PRK14329; (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
- pfam00919
Location:74 → 177
- UPF0004; Uncharacterized protein family UPF0004
- pfam01938
Location:474 → 548
- TRAM; TRAM domain
-
NM_001365728.1 → NP_001352657.1 mitochondrial tRNA methylthiotransferase CDK5RAP1 isoform f
Status: REVIEWED
- Source sequence(s)
-
AL355392
- Consensus CDS
-
CCDS93031.1
- UniProtKB/Swiss-Prot
- A8K7R0, Q5QP46, Q5QP47, Q5QP48, Q675N4, Q675N5, Q96SZ6, Q9BVG6, Q9BWZ5, Q9H859, Q9NZZ9, Q9Y3F0
- UniProtKB/TrEMBL
-
B4DI01
- Related
- ENSP00000350558.4, ENST00000357886.8
- Conserved Domains (1) summary
-
- cl27627
Location:88 → 588
- UPF0004; Uncharacterized protein family UPF0004
-
NM_016082.4 → NP_057166.4 mitochondrial tRNA methylthiotransferase CDK5RAP1 isoform b
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) differs in the 5' UTR and has multiple coding region differences compared to variant 1. These differences cause translation initiation at an alternate AUG and result in an isoform (b) with a distinct and longer N-terminus, compared to isoform a.
- Source sequence(s)
-
AA721451, AK027449, BM792566, CX785345, DA565688, DC427896, DR156307
- UniProtKB/TrEMBL
-
B4DI01
- Conserved Domains (3) summary
-
- PRK14329
Location:89 → 575
- PRK14329; (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
- pfam00919
Location:102 → 205
- UPF0004; Uncharacterized protein family UPF0004
- pfam01938
Location:502 → 576
- TRAM; TRAM domain
-
NM_016408.4 → NP_057492.2 mitochondrial tRNA methylthiotransferase CDK5RAP1 isoform a
See identical proteins and their annotated locations for NP_057492.2
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) encodes isoform (a).
- Source sequence(s)
-
AA721451, AK314532, DA028522
- Consensus CDS
-
CCDS13219.1
- UniProtKB/TrEMBL
- A0A0S2Z5J9, B4DI01
- Related
- ENSP00000217372.2, ENST00000346416.7
- Conserved Domains (1) summary
-
- cl27627
Location:88 → 574
- UPF0004; Uncharacterized protein family UPF0004