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    GHDC GH3 domain containing [ Bos taurus (domestic cattle) ]

    Gene ID: 515225, updated on 17-Aug-2024

    Summary

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    Official Symbol
    GHDCprovided by VGNC
    Official Full Name
    GH3 domain containingprovided by VGNC
    Primary source
    VGNC:VGNC:29347
    See related
    BGD:BT25390; Ensembl:ENSBTAG00000000666
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    D11LGP1
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 19
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 19 NC_037346.1 (42307202..42311660, complement)

    Chromosome 19 - NC_037346.1Genomic Context describing neighboring genes Neighboring gene potassium voltage-gated channel subfamily H member 4 Neighboring gene uncharacterized LOC132343075 Neighboring gene hypocretin neuropeptide precursor Neighboring gene signal transducer and activator of transcription 5B Neighboring gene transfer RNA glycine (anticodon CCC)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037346.1 Chromosome 19 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries and construction of a gene index for cattle. Smith TP, et al. Genome Res, 2001 Apr. PMID 11282978, Free PMC Article
    2. Characterization of 954 bovine full-CDS cDNA sequences. Harhay GP, et al. BMC Genomics, 2005 Nov 23. PMID 16305752, Free PMC Article
    3. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables acid-amino acid ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    GH3 domain-containing protein
    Names
    LGP1 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001075703.1 → NP_001069171.1  GH3 domain-containing protein precursor

      See identical proteins and their annotated locations for NP_001069171.1

      Status: PROVISIONAL

      Source sequence(s)
      BT026535
      UniProtKB/TrEMBL
      A0AAA9TXI4, Q0V7N5
      Related
      ENSBTAP00000102180.1, ENSBTAT00000107528.1
      Conserved Domains (2) summary
      cl21606
      Location:189 → 529
      PLN02247; indole-3-acetic acid-amido synthetase
      pfam03321
      Location:53 → 498
      GH3; GH3 auxin-responsive promoter

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037346.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      42307202..42311660 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010816248.4 → XP_010814550.1  GH3 domain-containing protein isoform X1

      UniProtKB/TrEMBL
      A0AAA9TXI4, F1MRP0
      Related
      ENSBTAP00000000876.6, ENSBTAT00000000876.7
      Conserved Domains (2) summary
      cl21606
      Location:189 → 534
      PLN02247; indole-3-acetic acid-amido synthetase
      pfam03321
      Location:53 → 503
      GH3; GH3 auxin-responsive promoter
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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    Research Materials