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    AP1B1 adaptor related protein complex 1 subunit beta 1 [ Bos taurus (domestic cattle) ]

    Gene ID: 506192, updated on 10-Oct-2024

    Summary

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    Official Symbol
    AP1B1provided by VGNC
    Official Full Name
    adaptor related protein complex 1 subunit beta 1provided by VGNC
    Primary source
    VGNC:VGNC:25976
    See related
    Ensembl:ENSBTAG00000001189
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See AP1B1 in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 17 NC_037344.1 (68598719..68647103, complement)

    Chromosome 17 - NC_037344.1Genomic Context describing neighboring genes Neighboring gene growth arrest specific 2 like 1 Neighboring gene RAS like family 10 member A Neighboring gene small nucleolar RNA SNORD125 Neighboring gene uncharacterized LOC100847257 Neighboring gene neurofilament heavy chain

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037344.1 Chromosome 17 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC128441

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables clathrin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of clathrin adaptor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of membrane coat IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    AP-1 complex subunit beta-1
    Names
    adaptor related protein complex 1 beta 1 subunit

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001045938.2 → NP_001039403.2  AP-1 complex subunit beta-1

      Status: VALIDATED

      Source sequence(s)
      BC105429, DV908100
      UniProtKB/TrEMBL
      A0AAA9SU32
      Related
      ENSBTAP00000001576.6, ENSBTAT00000001576.6
      Conserved Domains (5) summary
      smart00809
      Location:726 → 826
      Alpha_adaptinC2; Adaptin C-terminal domain
      smart01020
      Location:835 → 945
      B2-adapt-app_C; Beta2-adaptin appendage, C-terminal sub-domain
      pfam01602
      Location:11 → 534
      Adaptin_N; Adaptin N terminal region
      pfam12717
      Location:99 → 268
      Cnd1; non-SMC mitotic condensation complex subunit 1
      sd00044
      Location:51 → 75
      HEAT; HEAT repeat [structural motif]

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037344.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      68598719..68647103 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005218045.5 → XP_005218102.1  AP-1 complex subunit beta-1 isoform X3

      UniProtKB/TrEMBL
      A0AAA9SU32
      Related
      ENSBTAP00000088845.1, ENSBTAT00000097109.1
      Conserved Domains (5) summary
      smart00809
      Location:719 → 819
      Alpha_adaptinC2; Adaptin C-terminal domain
      smart01020
      Location:828 → 938
      B2-adapt-app_C; Beta2-adaptin appendage, C-terminal sub-domain
      pfam01602
      Location:11 → 534
      Adaptin_N; Adaptin N terminal region
      pfam12717
      Location:99 → 268
      Cnd1; non-SMC mitotic condensation complex subunit 1
      sd00044
      Location:51 → 75
      HEAT; HEAT repeat [structural motif]

    2. XM_059875910.1 → XP_059731893.1  AP-1 complex subunit beta-1 isoform X2

      UniProtKB/TrEMBL
      A0A3Q1LMB5
      Related
      ENSBTAP00000061024.2, ENSBTAT00000082015.2

    3. XM_059875907.1 → XP_059731890.1  AP-1 complex subunit beta-1 isoform X1

      UniProtKB/TrEMBL
      A0AAA9T8P4
      Related
      ENSBTAP00000093182.1, ENSBTAT00000131160.1

    4. XM_059875909.1 → XP_059731892.1  AP-1 complex subunit beta-1 isoform X1

      UniProtKB/TrEMBL
      A0AAA9T8P4

    5. XM_059875911.1 → XP_059731894.1  AP-1 complex subunit beta-1 isoform X3

    6. XM_059875908.1 → XP_059731891.1  AP-1 complex subunit beta-1 isoform X1

      UniProtKB/TrEMBL
      A0AAA9T8P4
    Nucleotide Protein Strain
    Heading Accession and Version

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