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    Cphx1 cytoplasmic polyadenylated homeobox 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 502042, updated on 2-Nov-2024

    Summary

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    Official Symbol
    Cphx1provided by RGD
    Official Full Name
    cytoplasmic polyadenylated homeobox 1provided by RGD
    Primary source
    RGD:1565219
    See related
    AllianceGenome:RGD:1565219
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Cphx; RGD1565219
    Summary
    Orthologous to human CPHXL (cytoplasmic polyadenylated homeobox like). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Uterus (RPKM 1.2), Spleen (RPKM 0.2) and 5 other tissues See more
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    Genomic context

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    See Cphx1 in Genome Data Viewer
    Location:
    16p16
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 16 NC_086034.1 (1540653..1544288)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 16 NC_051351.1 (1533883..1537248)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 16 NC_005115.4 (3787141..3796715, complement)

    Chromosome 16 - NC_086034.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134482312 Neighboring gene transmembrane protein 254 Neighboring gene double homeobox 4 Neighboring gene uncharacterized LOC120097444

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    paired box protein 6 homolog
    Names
    LIM/homeobox protein Lhx3-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086034.1 Reference GRCr8

      Range
      1540653..1544288
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039095224.2 → XP_038951152.1  paired box protein 6 homolog

      Conserved Domains (1) summary
      smart00389
      Location:34 → 88
      HOX; Homeodomain
    Nucleotide Protein Strain
    Heading Accession and Version

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