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    Fam110b family with sequence similarity 110, member B [ Rattus norvegicus (Norway rat) ]

    Gene ID: 500400, updated on 2-Nov-2024

    Summary

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    Official Symbol
    Fam110bprovided by RGD
    Official Full Name
    family with sequence similarity 110, member Bprovided by RGD
    Primary source
    RGD:1563403
    See related
    EnsemblRapid:ENSRNOG00000009114 AllianceGenome:RGD:1563403
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to be located in cytosol and mitochondrion. Orthologous to human FAM110B (family with sequence similarity 110 member B). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Brain (RPKM 29.7), Heart (RPKM 24.1) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Fam110b in Genome Data Viewer
    Location:
    5q12
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (23587093..23727188)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (18789362..18929647)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (18762488..18903818)

    Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORD73 Neighboring gene serine and arginine rich splicing factor 3, pseudogene 3 Neighboring gene small nucleolar RNA SNORA17 Neighboring gene receptor for activated C kinase 1, pseudogene 1 Neighboring gene ubiquitin-conjugating enzyme E2C like 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC109194

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in centrosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in mitochondrion ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    protein FAM110B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001024341.1 → NP_001019512.1  protein FAM110B

      See identical proteins and their annotated locations for NP_001019512.1

      Status: PROVISIONAL

      Source sequence(s)
      BC091289
      UniProtKB/Swiss-Prot
      Q5BJX5
      UniProtKB/TrEMBL
      A6JFN5
      Conserved Domains (2) summary
      pfam14160
      Location:249 → 357
      FAM110_C; Centrosome-associated C-terminus
      pfam14161
      Location:13 → 118
      FAM110_N; Centrosome-associated N-terminus

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086023.1 Reference GRCr8

      Range
      23587093..23727188
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063288187.1 → XP_063144257.1  protein FAM110B isoform X1

      UniProtKB/Swiss-Prot
      Q5BJX5
      UniProtKB/TrEMBL
      A6JFN5
      Related
      ENSRNOP00000076802.1, ENSRNOT00000099345.2

    2. XM_039110535.2 → XP_038966463.1  protein FAM110B isoform X1

      UniProtKB/Swiss-Prot
      Q5BJX5
      UniProtKB/TrEMBL
      A6JFN5
      Related
      ENSRNOP00000099443.1, ENSRNOT00000147200.1
      Conserved Domains (2) summary
      pfam14160
      Location:249 → 357
      FAM110_C; Centrosome-associated C-terminus
      pfam14161
      Location:13 → 118
      FAM110_N; Centrosome-associated N-terminus

    3. XM_006237840.5 → XP_006237902.1  protein FAM110B isoform X1

      See identical proteins and their annotated locations for XP_006237902.1

      UniProtKB/Swiss-Prot
      Q5BJX5
      UniProtKB/TrEMBL
      A6JFN5
      Related
      ENSRNOP00000110416.1, ENSRNOT00000154319.1
      Conserved Domains (2) summary
      pfam14160
      Location:249 → 357
      FAM110_C; Centrosome-associated C-terminus
      pfam14161
      Location:13 → 118
      FAM110_N; Centrosome-associated N-terminus

    4. XM_039110532.2 → XP_038966460.1  protein FAM110B isoform X1

      UniProtKB/Swiss-Prot
      Q5BJX5
      UniProtKB/TrEMBL
      A6JFN5
      Conserved Domains (2) summary
      pfam14160
      Location:249 → 357
      FAM110_C; Centrosome-associated C-terminus
      pfam14161
      Location:13 → 118
      FAM110_N; Centrosome-associated N-terminus

    5. XM_006237839.5 → XP_006237901.1  protein FAM110B isoform X1

      See identical proteins and their annotated locations for XP_006237901.1

      UniProtKB/Swiss-Prot
      Q5BJX5
      UniProtKB/TrEMBL
      A6JFN5
      Related
      ENSRNOP00000111157.1, ENSRNOT00000124035.1
      Conserved Domains (2) summary
      pfam14160
      Location:249 → 357
      FAM110_C; Centrosome-associated C-terminus
      pfam14161
      Location:13 → 118
      FAM110_N; Centrosome-associated N-terminus

    6. XM_039110534.2 → XP_038966462.1  protein FAM110B isoform X1

      UniProtKB/Swiss-Prot
      Q5BJX5
      UniProtKB/TrEMBL
      A6JFN5
      Related
      ENSRNOP00000110534.1, ENSRNOT00000144560.1
      Conserved Domains (2) summary
      pfam14160
      Location:249 → 357
      FAM110_C; Centrosome-associated C-terminus
      pfam14161
      Location:13 → 118
      FAM110_N; Centrosome-associated N-terminus

    7. XM_063288186.1 → XP_063144256.1  protein FAM110B isoform X1

      UniProtKB/Swiss-Prot
      Q5BJX5
      UniProtKB/TrEMBL
      A6JFN5

    8. XM_063288188.1 → XP_063144258.1  protein FAM110B isoform X1

      UniProtKB/Swiss-Prot
      Q5BJX5
      UniProtKB/TrEMBL
      A6JFN5
      Related
      ENSRNOP00000100846.1, ENSRNOT00000128574.1

    9. XM_006237843.5 → XP_006237905.1  protein FAM110B isoform X1

      See identical proteins and their annotated locations for XP_006237905.1

      UniProtKB/Swiss-Prot
      Q5BJX5
      UniProtKB/TrEMBL
      A6JFN5
      Related
      ENSRNOP00000107622.1, ENSRNOT00000167468.1
      Conserved Domains (2) summary
      pfam14160
      Location:249 → 357
      FAM110_C; Centrosome-associated C-terminus
      pfam14161
      Location:13 → 118
      FAM110_N; Centrosome-associated N-terminus
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5BJX5.1 GenPept UniProtKB/Swiss-Prot:Q5BJX5

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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