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    Ccdc60 coiled-coil domain containing 60 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 498190, updated on 2-Nov-2024

    Summary

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    Official Symbol
    Ccdc60provided by RGD
    Official Full Name
    coiled-coil domain containing 60provided by RGD
    Primary source
    RGD:1564283
    See related
    EnsemblRapid:ENSRNOG00000032684 AllianceGenome:RGD:1564283
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Orthologous to human CCDC60 (coiled-coil domain containing 60). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Restricted expression toward (RPKM 128.1) See more
    Orthologs
    human mouse all
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    Genomic context

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    See Ccdc60 in Genome Data Viewer
    Location:
    12q16
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 12 NC_086030.1 (45975394..46141078)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 12 NC_051347.1 (40314687..40480338)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 12 NC_005111.4 (46042422..46206748)

    Chromosome 12 - NC_086030.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134481301 Neighboring gene uncharacterized LOC134481336 Neighboring gene uncharacterized LOC102547467 Neighboring gene transmembrane protein 233 Neighboring gene protein kinase AMP-activated non-catalytic subunit beta 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC124983

    General protein information

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    Preferred Names
    coiled-coil domain-containing protein 60

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001034945.2 → NP_001030117.1  coiled-coil domain-containing protein 60

      See identical proteins and their annotated locations for NP_001030117.1

      Status: PROVISIONAL

      Source sequence(s)
      JAXUCZ010000012
      UniProtKB/Swiss-Prot
      Q3ZAV0
      UniProtKB/TrEMBL
      A0A8I6AHS0
      Related
      ENSRNOP00000092822.1, ENSRNOT00000098883.2
      Conserved Domains (1) summary
      pfam15769
      Location:58 → 531
      DUF4698; Domain of unknown function (DUF4698)

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086030.1 Reference GRCr8

      Range
      45975394..46141078
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006249464.4 → XP_006249526.1  coiled-coil domain-containing protein 60 isoform X1

      UniProtKB/TrEMBL
      A0A140TAG2, A0A8I6AHS0
      Related
      ENSRNOP00000048419.4, ENSRNOT00000046882.6
      Conserved Domains (1) summary
      pfam15769
      Location:58 → 532
      DUF4698; Domain of unknown function (DUF4698)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q3ZAV0.1 GenPept UniProtKB/Swiss-Prot:Q3ZAV0

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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