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    PAPPA-AS1 PAPPA antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 493913, updated on 17-Sep-2024

    Summary

    Official Symbol
    PAPPA-AS1provided by HGNC
    Official Full Name
    PAPPA antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:35152
    See related
    Ensembl:ENSG00000256040 MIM:610689; AllianceGenome:HGNC:35152
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    DIPAS; TAF4B; PAPPAS; TAF2C2; PAPPAAS; PAPPA-AS; TAFII105; NCRNA00156
    Summary
    Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. [provided by Alliance of Genome Resources, Apr 2022]
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    Genomic context

    See PAPPA-AS1 in Genome Data Viewer
    Location:
    9q33.1
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (116398157..116400606, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (128591160..128593610, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (119160436..119162885, complement)

    Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105376236 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20219 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:118918797-118919298 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:118919299-118919798 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr9:119034400-119035064 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr9:119041319-119041950 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr9:119044717-119045395 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr9:119048252-119048828 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr9:119048829-119049403 Neighboring gene pappalysin 1 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr9:119093474-119094066 Neighboring gene PAPPA antisense RNA 2 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr9:119117289-119117861 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28883 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20220 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:119157715-119158214 Neighboring gene ReSE screen-validated silencer GRCh37_chr9:119185010-119185266 Neighboring gene GATA motif-containing MPRA enhancer 254 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr9:119233104-119233695 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr9:119233696-119234286 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:119243946-119244892 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_106426 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr9:119301784-119302983 Neighboring gene Sharpr-MPRA regulatory region 10185 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_106457 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_106460 Neighboring gene astrotactin 2 Neighboring gene ASTN2 antisense RNA 1 Neighboring gene uncharacterized LOC107987014

    Genomic regions, transcripts, and products

    General gene information

    Markers

    Other Names

    • DIPLA1-antisense expressed
    • PAPPA antisense RNA 1 (non-protein coding)
    • PAPPA antisense RNA 1 (tail to tail)

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
     

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_103711.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AY623011
      Related
      ENST00000445861.3

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

      Range
      116398157..116400606 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060933.1 Alternate T2T-CHM13v2.0

      Range
      128591160..128593610 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)