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    CD1G CD1g molecule [ Gallus gallus (chicken) ]

    Gene ID: 425801, updated on 17-Aug-2024

    Summary

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    Official Symbol
    CD1Gprovided by CGNC
    Official Full Name
    CD1g moleculeprovided by CGNC
    Primary source
    CGNC:23751
    See related
    Ensembl:ENSGALG00010003250
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    CD1C; CD1D; CD1.1; CD1.2; CD1A1; chCD1-1
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    Genomic context

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    See CD1G in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 16 NC_052547.1 (2286197..2289047, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 16 NC_052588.1 (1187339..1190189, complement)

    Chromosome 16 - NC_052547.1Genomic Context describing neighboring genes Neighboring gene cytochrome P450 family 21 subfamily A member 2 Neighboring gene tenascin XB Neighboring gene leukotriene B4 receptor 3 Neighboring gene CD1f molecule Neighboring gene carnitine palmitoyltransferase like Neighboring gene transfer RNA leucine (anticodon AAG)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Structural basis for lipid-antigen recognition in avian immunity. Dvir H, et al. J Immunol, 2010 Mar 1. PMID 20100930, Free PMC Article
    2. Two CD1 genes map to the chicken MHC, indicating that CD1 genes are ancient and likely to have been present in the primordial MHC. Salomonsen J, et al. Proc Natl Acad Sci U S A, 2005 Jun 14. PMID 15939887, Free PMC Article
    3. Characterization of two avian MHC-like genes reveals an ancient origin of the CD1 family. Miller MM, et al. Proc Natl Acad Sci U S A, 2005 Jun 14. PMID 15939884, Free PMC Article
    4. Chicken CD1 genes are located in the MHC: CD1 and endothelial protein C receptor genes constitute a distinct subfamily of class-I-like genes that predates the emergence of mammals. Maruoka T, et al. Immunogenetics, 2005 Sep. PMID 16133451
    5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables endogenous lipid antigen binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables exogenous lipid antigen binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables lipopeptide binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in antigen processing and presentation, endogenous lipid antigen via MHC class Ib IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in antigen processing and presentation, exogenous lipid antigen via MHC class Ib IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in immune response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of T cell mediated cytotoxicity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in external side of plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    CD1g molecule
    Names
    CD1-1 antigen
    CD1D antigen, d polypeptide
    CD1c molecule
    CD1d molecule
    T-cell surface glycoprotein CD1A1 antigen
    d polypeptide

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001017412.2 → NP_001017412.2  CD1g molecule precursor

      Status: PROVISIONAL

      Source sequence(s)
      JAENSK010000283
      UniProtKB/TrEMBL
      A5HUM9
      Related
      ENSGALP00010004554.1, ENSGALT00010007623.1
      Conserved Domains (1) summary
      smart00407
      Location:223 → 290
      IGc1; Immunoglobulin C-Type

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052547.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      2286197..2289047 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052588.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      1187339..1190189 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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