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    PCDH15 protocadherin related 15 [ Gallus gallus (chicken) ]

    Gene ID: 423644, updated on 10-Oct-2024

    Summary

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    Symbol
    PCDH15provided by CGNC
    Full Name
    protocadherin related 15provided by CGNC
    Primary source
    CGNC:52015
    See related
    Ensembl:ENSGALG00010009210
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    protocadherin-15
    Orthologs
    human mouse all
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    Genomic context

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    See PCDH15 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    52
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 6 NC_052537.1 (6303212..7294179)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 6 NC_052578.1 (6188955..7167011)

    Chromosome 6 - NC_052537.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101748176 Neighboring gene uncharacterized LOC124418044 Neighboring gene uncharacterized LOC121111068 Neighboring gene uncharacterized LOC107053623 Neighboring gene uncharacterized LOC121111069 Neighboring gene uncharacterized LOC121111070 Neighboring gene uncharacterized LOC121111196 Neighboring gene uncharacterized LOC121113297 Neighboring gene uncharacterized LOC121113298 Neighboring gene transfer RNA serine (anticodon UGA) Neighboring gene DnaJ heat shock protein family (Hsp40) member C12 Neighboring gene sirtuin 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Alpha-protocadherins are presynaptic and axonal in nicotinic pathways. Blank M, et al. Mol Cell Neurosci, 2004 Aug. PMID 15276155
    2. The tip-link antigen, a protein associated with the transduction complex of sensory hair cells, is protocadherin-15. Ahmed ZM, et al. J Neurosci, 2006 Jun 28. PMID 16807332, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in inner ear development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in sensory perception of sound IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in stereocilium IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protocadherin-15
    Names
    protocadherin 15
    protocadherin-15-CD3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001044654.2 → NP_001038119.2  protocadherin-15 isoform 2 precursor

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000227
      UniProtKB/TrEMBL
      A0A8V0Y542
      Related
      ENSGALP00010012630.1, ENSGALT00010022028.1
      Conserved Domains (1) summary
      cd11304
      Location:1045 → 1140
      Cadherin_repeat; Cadherin tandem repeat domain

    2. NM_001398235.1 → NP_001385164.1  protocadherin-15 isoform 1 precursor

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000227
      Conserved Domains (1) summary
      cd11304
      Location:1045 → 1140
      Cadherin_repeat; Cadherin tandem repeat domain

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052537.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      6303212..7294179
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046942815.1 → XP_046798771.1  protocadherin-15 isoform X5

      UniProtKB/TrEMBL
      A0A8V0Y542

    2. XM_046942814.1 → XP_046798770.1  protocadherin-15 isoform X4

    3. XM_046942813.1 → XP_046798769.1  protocadherin-15 isoform X3

      Related
      ENSGALP00010012635.1, ENSGALT00010022037.1

    4. XM_040702340.2 → XP_040558274.1  protocadherin-15 isoform X1

      UniProtKB/Swiss-Prot
      F1N8B3, Q0ZM04, Q0ZM05, Q0ZM06, Q0ZM07, Q0ZM08, Q0ZM09, Q0ZM10, Q0ZM11, Q0ZM12, Q0ZM13, Q0ZM14
      Conserved Domains (1) summary
      cd11304
      Location:1045 → 1140
      Cadherin_repeat; Cadherin tandem repeat domain

    5. XM_046942812.1 → XP_046798768.1  protocadherin-15 isoform X2

      UniProtKB/TrEMBL
      A0A8V0XWJ2
      Related
      ENSGALP00010012627.1, ENSGALT00010022024.1

    6. XM_040702341.2 → XP_040558275.1  protocadherin-15 isoform X1

      UniProtKB/Swiss-Prot
      F1N8B3, Q0ZM04, Q0ZM05, Q0ZM06, Q0ZM07, Q0ZM08, Q0ZM09, Q0ZM10, Q0ZM11, Q0ZM12, Q0ZM13, Q0ZM14
      Conserved Domains (1) summary
      cd11304
      Location:1045 → 1140
      Cadherin_repeat; Cadherin tandem repeat domain

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052578.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      6188955..7167011
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046920051.1 → XP_046776007.1  protocadherin-15 isoform X5

    2. XM_046920050.1 → XP_046776006.1  protocadherin-15 isoform X4

    3. XM_046920049.1 → XP_046776005.1  protocadherin-15 isoform X3

    4. XM_046920046.1 → XP_046776002.1  protocadherin-15 isoform X1

    5. XM_046920048.1 → XP_046776004.1  protocadherin-15 isoform X2

    6. XM_046920047.1 → XP_046776003.1  protocadherin-15 isoform X1

    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0ZM14.1 GenPept UniProtKB/Swiss-Prot:Q0ZM14

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials