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    ODC ornithine decarboxylase [ Gallus gallus (chicken) ]

    Gene ID: 421937, updated on 10-Oct-2024

    Summary

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    Official Symbol
    ODCprovided by CGNC
    Official Full Name
    ornithine decarboxylaseprovided by CGNC
    Primary source
    CGNC:12311
    See related
    Ensembl:ENSGALG00010003604
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    ODC1
    Orthologs
    human mouse all
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    Genomic context

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    See ODC in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 3 NC_052534.1 (96471097..96479178, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 3 NC_052575.1 (96285544..96293646, complement)

    Chromosome 3 - NC_052534.1Genomic Context describing neighboring genes Neighboring gene hippocalcin like 1 Neighboring gene microRNA 6655 Neighboring gene uncharacterized LOC121110477 Neighboring gene uncharacterized LOC121110478 Neighboring gene nucleolar protein 10

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Molecular cloning and sequence analysis of a chicken ornithine decarboxylase cDNA. Johnson R, et al. Anim Genet, 1992. PMID 1416246
    2. Ornithine decarboxylase gene is a positional candidate gene affecting growth and carcass traits in F₂ intercross chickens. Uemoto Y, et al. Poult Sci, 2011 Jan. PMID 21177441
    3. A large database of chicken bursal ESTs as a resource for the analysis of vertebrate gene function. Abdrakhmanov I, et al. Genome Res, 2000 Dec. PMID 11116100, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The role of ornithine decarboxylase genotype in growth and body composition traits in chickens is reported.
      Title: Ornithine decarboxylase gene is a positional candidate gene affecting growth and carcass traits in F₂ intercross chickens.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ornithine decarboxylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in putrescine biosynthetic process from ornithine IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ornithine decarboxylase
    Names
    ornithine decarboxylase 1
    NP_001161238.2
    XP_015131527.2
    XP_040553130.1
    XP_046770121.1
    XP_046770122.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001167766.2 → NP_001161238.2  ornithine decarboxylase

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000066
      UniProtKB/Swiss-Prot
      P27118
      UniProtKB/TrEMBL
      A0A8V0XE36
      Related
      ENSGALP00010004940.1, ENSGALT00010008375.1
      Conserved Domains (1) summary
      cd00622
      Location:41 → 412
      PLPDE_III_ODC; Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052534.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      96471097..96479178 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015276041.4 → XP_015131527.2  ornithine decarboxylase isoform X1

      UniProtKB/Swiss-Prot
      P27118
      UniProtKB/TrEMBL
      A0A8V0XE36
      Conserved Domains (1) summary
      cd00622
      Location:41 → 412
      PLPDE_III_ODC; Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase

    2. XM_040697196.2 → XP_040553130.1  ornithine decarboxylase isoform X1

      UniProtKB/Swiss-Prot
      P27118
      UniProtKB/TrEMBL
      A0A8V0XE36
      Conserved Domains (1) summary
      cd00622
      Location:41 → 412
      PLPDE_III_ODC; Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052575.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      96285544..96293646 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046914165.1 → XP_046770121.1  ornithine decarboxylase isoform X1

    2. XM_046914166.1 → XP_046770122.1  ornithine decarboxylase isoform X1

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P27118.1 GenPept UniProtKB/Swiss-Prot:P27118

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials