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    EBAG9 estrogen receptor binding site associated antigen 9 [ Canis lupus familiaris (dog) ]

    Gene ID: 403500, updated on 17-Aug-2024

    Summary

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    Official Symbol
    EBAG9provided by VGNC
    Official Full Name
    estrogen receptor binding site associated antigen 9provided by VGNC
    Primary source
    VGNC:VGNC:40174
    See related
    Ensembl:ENSCAFG00845013428
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Also known as
    RCAS1
    Orthologs
    human mouse all
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    Genomic context

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    See EBAG9 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 13 NC_051817.1 (10363392..10381433)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 13 NC_006595.4 (10077585..10090151)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 13 NC_049234.1 (10316781..10329348)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 13 NC_049273.1 (10110045..10122607)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 13 NC_049754.1 (10227089..10239836)

    Chromosome 13 - NC_051817.1Genomic Context describing neighboring genes Neighboring gene PKHD1 like 1 Neighboring gene uncharacterized LOC111098525 Neighboring gene basic proline-rich protein-like Neighboring gene syntabulin Neighboring gene uncharacterized LOC102155669

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Molecular cloning of canine RCAS1 cDNA. Okamura Y, et al. J Vet Med Sci, 2003 Aug. PMID 12951425
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in secretory granule IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    receptor-binding cancer antigen expressed on SiSo cells
    Names
    cancer-associated surface antigen RCAS1
    estrogen receptor-binding fragment-associated gene 9 protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001002996.1 → NP_001002996.1  receptor-binding cancer antigen expressed on SiSo cells

      See identical proteins and their annotated locations for NP_001002996.1

      Status: PROVISIONAL

      Source sequence(s)
      AB083366
      UniProtKB/Swiss-Prot
      Q865S0
      UniProtKB/TrEMBL
      A0A8I3S049, A0A8P0S6Q8
      Related
      ENSCAFP00845018849.1, ENSCAFT00845024001.1
      Conserved Domains (1) summary
      pfam07946
      Location:160 → 203
      DUF1682; Protein of unknown function (DUF1682)

    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051817.1 Reference ROS_Cfam_1.0

      Range
      10363392..10381433
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038684508.1 → XP_038540436.1  receptor-binding cancer antigen expressed on SiSo cells isoform X2

      UniProtKB/TrEMBL
      A0A8C0JRF5, A0A8C0YX36, A0A8I3NZY8, A0A8I3S049, A0A8P0S6Q8
      Related
      ENSCAFP00845018887.1, ENSCAFT00845024045.1
      Conserved Domains (1) summary
      pfam07946
      Location:160 → 203
      DUF1682; Protein of unknown function (DUF1682)

    2. XM_038684507.1 → XP_038540435.1  receptor-binding cancer antigen expressed on SiSo cells isoform X2

      UniProtKB/TrEMBL
      A0A8C0JRF5, A0A8C0YX36, A0A8I3NZY8, A0A8I3S049, A0A8P0S6Q8
      Conserved Domains (1) summary
      pfam07946
      Location:160 → 203
      DUF1682; Protein of unknown function (DUF1682)

    3. XM_038684506.1 → XP_038540434.1  receptor-binding cancer antigen expressed on SiSo cells isoform X2

      UniProtKB/TrEMBL
      A0A8C0JRF5, A0A8C0YX36, A0A8I3NZY8, A0A8I3S049, A0A8P0S6Q8
      Conserved Domains (1) summary
      pfam07946
      Location:160 → 203
      DUF1682; Protein of unknown function (DUF1682)

    4. XM_038684505.1 → XP_038540433.1  receptor-binding cancer antigen expressed on SiSo cells isoform X1

      UniProtKB/TrEMBL
      A0A8I3NSV4, A0A8P0TU12
      Related
      ENSCAFP00845018908.1, ENSCAFT00845024072.1
      Conserved Domains (1) summary
      pfam07946
      Location:165 → 208
      DUF1682; Protein of unknown function (DUF1682)

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049273.1 Alternate UMICH_Zoey_3.1

      Range
      10110045..10122607
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049754.1 Alternate UNSW_CanFamBas_1.0

      Range
      10227089..10239836
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049234.1 Alternate UU_Cfam_GSD_1.0

      Range
      10316781..10329348
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006595.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      10077585..10090151
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q865S0.1 GenPept UniProtKB/Swiss-Prot:Q865S0

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials