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    LINC02902 long intergenic non-protein coding RNA 2902 [ Homo sapiens (human) ]

    Gene ID: 401335, updated on 17-Sep-2024

    Summary

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    Official Symbol
    LINC02902provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2902provided by HGNC
    Primary source
    HGNC:HGNC:34432
    See related
    Ensembl:ENSG00000221845 AllianceGenome:HGNC:34432
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    C7orf65
    Expression
    Low expression observed in reference dataset See more
    Orthologs
    all
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    Genomic context

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    See LINC02902 in Genome Data Viewer
    Location:
    7p12.3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (47655244..47661648)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (47817809..47824213)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (47694842..47701246)

    Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene tensin 3 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:47510136-47510952 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:47514765-47515308 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr7:47519651-47520334 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr7:47520335-47521016 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:47521589-47522136 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:47528112-47528658 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:47533187-47533778 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25978 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25979 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:47541736-47542333 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:47542334-47542930 Neighboring gene small nucleolar RNA, C/D box 151 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:47543969-47544469 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:47558749-47559460 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:47559461-47560172 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:47560443-47560949 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:47560950-47561455 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:47576373-47577246 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:47595932-47596660 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:47597389-47598116 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:47621045-47621582 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:47621583-47622120 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25980 Neighboring gene ReSE screen-validated silencer GRCh37_chr7:47650466-47650707 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:47653818-47654364 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:47654365-47654909 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr7:47665579-47666118 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:47674273-47674984 Neighboring gene long intergenic non-protein coding RNA 1447 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:47699457-47699997 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:47711792-47712670 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:47719702-47720215 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:47721760-47722273 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:47749727-47750441 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25981 Neighboring gene Sharpr-MPRA regulatory region 2260 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:47763585-47764516 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:47778987-47779641 Neighboring gene Sharpr-MPRA regulatory region 6862 Neighboring gene Sharpr-MPRA regulatory region 14324 Neighboring gene long intergenic non-protein coding RNA 525 Neighboring gene PKD1L1 antisense RNA 1 Neighboring gene polycystin 1 like 1, transient receptor potential channel interacting

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Human chromosome 7: DNA sequence and biology. Scherer SW, et al. Science, 2003 May 2. PMID 12690205, Free PMC Article
    2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Find tests for this gene in the NIH Genetic Testing Registry (GTR)

    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Markers

    Homology

    Other Names

    • FLJ44108 protein
    • uncharacterized protein C7orf65

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_171030.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC095067
      Related
      ENST00000408988.2

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

      Range
      47655244..47661648
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060931.1 Alternate T2T-CHM13v2.0

      Range
      47817809..47824213
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001123065.1: Suppressed sequence

      Description
      NM_001123065.1: This RefSeq was removed because it is now thought that this gene does not encode a protein.
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6ZTY9.1 GenPept UniProtKB/Swiss-Prot:Q6ZTY9

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials